Browse Element(s) Details


Os.5227.1.S1_at

Description gb:AK121049.1
DB_XREF= gi:37990672
TID=Os.5227.1
CNT=16
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.5227 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013070I10, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023055F20, full insert sequence.
FL= gb:AK066481.1 gb:AK121049.1 gb:AK062207.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g1019011/11secreted protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g10140OsAffx.24182.1.S1_at11/112+5315119..5318064Transcription factor HBP-1b, putative, expressed
LOC_Os02g10150OsAffx.2562.1.S1_at11/112+5321781..5322421hypothetical protein
LOC_Os02g10160Os.25152.1.S1_at11/112+5324567..5328285expressed protein
LOC_Os02g10170OsAffx.11969.1.S1_at11/112+5329016..5330521expressed protein
LOC_Os02g10180Os.38811.1.S1_a_at11/112+5331907..5336902DnaJ domain containing protein, expressed
LOC_Os02g10180OsAffx.16132.1.S1_at1/112+5331907..5336902DnaJ domain containing protein, expressed
LOC_Os02g10180Os.25087.1.S1_at1/112+5331907..5336902DnaJ domain containing protein, expressed
LOC_Os02g10190Os.5227.1.S1_at11/112+5339189..5344517secreted protein, putative, expressed
LOC_Os02g10200Os.12188.1.S1_at11/112+5345611..5347486AN1-like Zinc finger family protein, expressed
LOC_Os02g10210OsAffx.18697.2.S1_at11/112+5348720..5350221expressed protein
LOC_Os02g10210Os.45990.2.S1_x_at8/112+5348720..5350221expressed protein
LOC_Os02g10220Os.6105.1.S1_at11/112+5351367..5355145Chaperone protein dnaJ 6, putative, expressed
LOC_Os02g10230Os.18721.1.S1_at11/112+5357310..5361629ZIP Zinc transporter family protein, expressed
LOC_Os02g10240Os.55753.1.S1_at11/112+5364450..5366226expressed protein
LOC_Os02g10240Os.55753.1.S1_x_at11/112+5364450..5366226expressed protein
LOC_Os02g10240OsAffx.29835.1.S1_x_at1/112+5364450..5366226expressed protein
LOC_Os02g10250OsAffx.11971.1.S1_at11/112+5369277..5369552hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5227.1.S1_at--461--1691Chr02:5343952..5343976 (25 bp)
ACCAAACCGGGATGCTTCCTGGTGA
LOC_Os02g10190
Os.5227.1.S1_at--688--8351Chr02:5343979..5344003 (25 bp)
GGCGTGGATTACTCCGTGGGTACAA
LOC_Os02g10190
Os.5227.1.S1_at--849--5171Chr02:5344019..5344043 (25 bp)
GCAAGAGTTCTCTTCCAAGCATCAA
LOC_Os02g10190
Os.5227.1.S1_at--615--2551Chr02:5344042..5344066 (25 bp)
AACGGGATTTTCGAGCAGGCCGCGA
LOC_Os02g10190
Os.5227.1.S1_at--1097--10811Chr02:5344070..5344094 (25 bp)
TTGTGCAGGCTGCTCCATTGAGGCA
LOC_Os02g10190
Os.5227.1.S1_at--1096--9971Chr02:5344096..5344120 (25 bp)
TACCATCCTATCAGCTTCATTGCAA
LOC_Os02g10190
Os.5227.1.S1_at--1105--1311Chr02:5344130..5344154 (25 bp)
AGAGGAACTTCCTGCTTGAACCATT
LOC_Os02g10190
Os.5227.1.S1_at--748--10751Chr02:5344145..5344169 (25 bp)
TTGAACCATTGTACAGCCTGAGAGA
LOC_Os02g10190
Os.5227.1.S1_at--241--5931Chr02:5344166..5344190 (25 bp)
GAGACGAATTCTACACGGTTTACTT
LOC_Os02g10190
Os.5227.1.S1_at--753--9771Chr02:5344254..5344278 (25 bp)
TAATGGTTGTCCTTACTATACTGTA
LOC_Os02g10190
Os.5227.1.S1_at--317--3891Chr02:5344382..5344406 (25 bp)
CTGTGGCATTTTCGTATCTTGGTAA
LOC_Os02g10190
Target Sequence 
ACCAAACCGGGATGCTTCCTGGTGANAGGCGTGGATTACTCCGTGGGTACAAAGATTCAGGTCAGTTGCAAGAGTTCTCT
TCCAAGCATCAACGGGATTTTCGAGCAGGCCGCGAGCTTTGTGCAGGCTGCTCCATTGAGGCAGTACCATCCTATCAGCT
TCATTGCAAAGGGGGTGAAGAGGAACTTCCTGCTTGAACCATTGTACAGCCTGAGAGACGAATTCTACACGGTTTACTTC
AACCTTGGGGCTTGAACCTTGAAAGAGGTTACTCATTAGTAGAAAGAATCAAGAATTCAGAATAATGGTTGTCCTTACTA
TACTGTAATTTAGAATATGCAGCCAAAGAGGAAACGTTTTGTTTCTTCTGAAATTGTAGGATAATTTTTACTGAGTTCAG
TGCAATGTTGTGCAATTATGAGTTTTTTTTNCTGTGGCATTTTCGTATCTTGGTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5227.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis