Browse Element(s) Details


Os.52353.1.S1_at

Description gb:AK066582.1
DB_XREF= gi:32976600
TID=Os.52353.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.52353 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-103-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013071J07, full insert sequence.
FL= gb:AK066582.1 gb:AK106416.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3986011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39820OsAffx.21171.3.S1_x_at2/119+22828444..22834333retrotransposon protein, putative, unclassified
LOC_Os09g39820OsAffx.20729.1.S1_x_at2/119+22828444..22834333retrotransposon protein, putative, unclassified
LOC_Os09g39820OsAffx.21171.5.S1_x_at1/119+22828444..22834333retrotransposon protein, putative, unclassified
LOC_Os09g39830OsAffx.22927.2.S1_x_at1/119+22834728..22838121retrotransposon protein, putative, unclassified
LOC_Os09g39830OsAffx.22894.1.S1_at1/119+22834728..22838121retrotransposon protein, putative, unclassified
LOC_Os09g39830OsAffx.22711.4.A1_x_at1/119+22834728..22838121retrotransposon protein, putative, unclassified
LOC_Os09g39830OsAffx.22927.1.S1_x_at1/119+22834728..22838121retrotransposon protein, putative, unclassified
LOC_Os09g39840NANA9+22838562..22839161retrotransposon protein, putative, unclassified
LOC_Os09g39850OsAffx.18062.1.S1_x_at11/119+22846805..22847455ethylene response factor ERF1, putative
LOC_Os09g39860Os.52353.1.S2_at11/119+22851868..22853942expressed protein
LOC_Os09g39860Os.52353.1.S1_at11/119+22851868..22853942expressed protein
LOC_Os09g39870Os.6306.1.S1_at11/119+22854836..228586012-phosphoglycerate kinase, putative, expressed
LOC_Os09g39870Os.6306.1.S2_at11/119+22854836..228586012-phosphoglycerate kinase, putative, expressed
LOC_Os09g39880OsAffx.9045.1.S1_x_at4/119+22862064..22866509hypothetical protein
LOC_Os09g39880OsAffx.9045.1.S1_at3/119+22862064..22866509hypothetical protein
LOC_Os09g39890Os.31312.1.S1_at8/119+22867656..22871158retrotransposon protein, putative, unclassified
LOC_Os09g39890Os.31312.5.S1_x_at5/119+22867656..22871158retrotransposon protein, putative, unclassified
LOC_Os09g39890Os.31312.2.S1_x_at4/119+22867656..22871158retrotransposon protein, putative, unclassified
LOC_Os09g39900NANA9+22871482..22877637retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.52353.1.S1_at--134--8311Chr09:22853144..22853168 (25 bp)
GGCTCACGCACATGGGCGCGGCGCA
LOC_Os09g39860
Os.52353.1.S1_at--970--8671Chr09:22853039..22853063 (25 bp)
TGTCCGGAGAGCAGGCGACCACGTA
LOC_Os09g39860
Os.52353.1.S1_at--1072--5911Chr09:22853031..22853055 (25 bp)
GAGCAGGCGACCACGTACCGGGTCC
LOC_Os09g39860
Os.52353.1.S1_at--338--8131Chr09:22852945..22852969 (25 bp)
GGACAGGAGGCTGGGCGACTCGTTC
LOC_Os09g39860
Os.52353.1.S1_at--663--3991Chr09:22852847..22852871 (25 bp)
CGTGGGTCGCCGGAAAGATATCCAA
LOC_Os09g39860
Os.52353.1.S1_at--510--5571Chr09:22852835..22852859 (25 bp)
GAAAGATATCCAAGGCCTACCTCGA
LOC_Os09g39860
Os.52353.1.S1_at--1071--1911Chr09:22852807..22852831 (25 bp)
ACGGGCTTGGGACCACTCGCTTCAG
LOC_Os09g39860
Os.52353.1.S1_at--107--10571Chr09:22852726..22852750 (25 bp)
TTCTTCTCTTCTCATGTTTCCAAGG
LOC_Os09g39860
Os.52353.1.S1_at--129--9511Chr09:22852722..22852746 (25 bp)
TCTCTTCTCATGTTTCCAAGGCCCA
LOC_Os09g39860
Os.52353.1.S1_at--694--3651Chr09:22852642..22852666 (25 bp)
CTTCTTCTTTCCTCTAATTCATTCA
LOC_Os09g39860
Os.52353.1.S1_at--704--9551Chr09:22852637..22852661 (25 bp)
TCTTTCCTCTAATTCATTCATGATT
LOC_Os09g39860
Target Sequence 
GGCTCACGCACATGGGCGCGGCGCAGTTGGCGGAATTGGAAGATGAGGAGGAGCCGTCGCGGGAGGCAGACGTGCGCGCC
TTCGGGCTGCTGCTGCTGGAGCTGCTGTCCGGAGAGCAGGCGACCACGTACCGGGTCCGGGAGGCGGTGGTTGAGACGGC
GGCGGCGGCGCGGGCCAACGGGCGGGTGAGGAGCTGGGTGGACAGGAGGCTGGGCGACTCGTTCCCGCAGGCGGTGGCGG
AGAGGCTGCTGGATGTGGGGCTGCGGTGCGCCTCCGCCTCGCCACCGCCGGAGATGACGTGGGTCGCCGGAAAGATATCC
AAGGCCTACCTCGANTCACGGGCTTGGGACCACTCGCTTCAGCGCCCGCAGGCCCACCTCTCGTCTGTCTCGCTCGCCCC
GCGCTGAGGCCCAGCTGCTTCTTCTCTTCTCATGTTTCCAAGGCCCAACTCAATATTTGGGCCTTCTTTCGTTTCGGTAC
TAATTCCGCCCGCCAAACTACTCTTCTTCTTTCCTCTAATTCATTCATGATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.52353.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis