Browse Element(s) Details


Os.53108.1.S1_at

Description gb:AK070854.1
DB_XREF= gi:32980877
TID=Os.53108.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53108 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023064O14, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023064O14, full insert sequence.
FL= gb:AK070854.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5816011/11expressed protein
LOC_Os08g231401/11expressed protein
LOC_Os01g261601/11HASTY, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g58090Os.26501.1.S1_at11/112+35547995..35553041Splicing factor 3B subunit 2, putative, expressed
LOC_Os02g58100OsAffx.3100.1.S1_at11/112+35553789..35555508expressed protein
LOC_Os02g58110OsAffx.12687.1.S1_at11/112+35556810..35561862expressed protein
LOC_Os02g58120Os.52638.1.S1_at10/112+35561852..35564542expressed protein
LOC_Os02g58139Os.49282.1.S1_x_at11/112+35566509..35572288pentatricopeptide, putative, expressed
LOC_Os02g58139Os.49282.2.S1_at11/112+35566509..35572288pentatricopeptide, putative, expressed
LOC_Os02g58160Os.53108.1.S1_at11/112+35572680..35576955expressed protein
LOC_Os02g58150Os.6227.1.S1_at11/112+35579093..35583372expressed protein
LOC_Os02g58150OsAffx.4983.2.S1_x_at11/112+35579093..35583372expressed protein
LOC_Os02g58150Os.13735.1.S1_at8/112+35579093..35583372expressed protein
LOC_Os02g58150OsAffx.2831.1.S1_x_at1/112+35579093..35583372expressed protein
LOC_Os02g58150OsAffx.2831.1.S1_at1/112+35579093..35583372expressed protein
LOC_Os02g58170Os.54438.1.S1_x_at11/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170OsAffx.4983.1.S1_at10/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170Os.9404.1.S1_at8/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170Os.23162.1.S1_a_at2/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170OsAffx.25311.1.A1_at1/112+35589744..35597741hAT family dimerisation domain containing protein, expressed
LOC_Os02g58170OsAffx.31849.1.S1_at1/112+35589744..35597741hAT family dimerisation domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009910biological_processnegative regulation of flower development
GO:0009944biological_processpolarity specification of adaxial/abaxial axis
GO:0009965biological_processleaf morphogenesis
GO:0035281biological_processpre-microRNA export from nucleus
GO:0048364biological_processroot development
GO:0048367biological_processshoot development
GO:0005635cellular_componentnuclear envelope
GO:0005487molecular_functionnucleocytoplasmic transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53108.1.S1_at--1133--9891Chr02:35573401..35573425 (25 bp)
TACTACTACCATGGACTAATCCTTG
LOC_Os02g58160
Os.53108.1.S1_at--168--5591Chr02:35573360..35573384 (25 bp)
GAAATCTCATAGGACGGCGGTGGCA
LOC_Os02g58160
Os.53108.1.S1_at--214--5411Chr02:35573299..35573322 (24 bp)
GAAGCTGCATGTGAAGCCTTCCATG
LOC_Os02g58160
Os.53108.1.S1_at--253--471Chr02:35573162..35573294 (25 bp)
ATCTCCTGTTTCAAGAAGCCCGCCG
LOC_Os02g58160
Os.53108.1.S1_at--360--871Chr02:35573097..35573121 (25 bp)
AGGAGTCGTCGTGCAAAGTTCGGAT
LOC_Os02g58160
Os.53108.1.S1_at--277--2811Chr02:35573082..35573106 (25 bp)
AAGTTCGGATCAACAAGGACCTCTA
LOC_Os02g58160
Os.53108.1.S1_at--239--3351Chr02:35572958..35572982 (25 bp)
CCCACTCACTGACACCAATTAAGGA
LOC_Os02g58160
Os.53108.1.S1_at--474--131Chr02:35572911..35572935 (25 bp)
ATTAAGGTCCAAGGCATCATGCAGA
LOC_Os02g58160
Os.53108.1.S1_at--436--751Chr02:35572822..35572846 (25 bp)
ATGTATGCATGGGTGTCACACCGCA
LOC_Os02g58160
Os.53108.1.S1_at--550--2171Chr02:35572805..35572829 (25 bp)
ACACCGCACCACATGTTGCAAGAAA
LOC_Os02g58160
Os.53108.1.S1_at--829--1213Chr08:13814126..13814556 (25 bp)
AGTTACTACTACCTCCATACATATA
LOC_Os08g23140
Target Sequence 
TACTACTACCATGGACTAATCCTTGATGAAGGAAACAGTGAGAAATCTCATAGGACGGCGGTGGCAGCGCTGCAATCAGC
GGAGGAGTTGCTCAAAGAGAGCGAAGCTGCATGTGAAGCCTTCCATGCGGCATCTCCTGTTTCAAGAAGCCCGCCGCTGT
GGGGATCGATGAGGTATCTTCAGGAGAAGATACACAAGGAGTCGTCGTGCAAAGTTCGGATCAACAAGGACCTCTACAAC
AAGGACAACATCATCATCCATGACCATGCTGACAGCGCGCCGCCGCTGCCGGACTTCGCCGTGGCTCTCAAACCCGACGA
GTATCGCCTTCCTCCCCCACTCACTGACACCAATTAAGGATCGAGTCGACAAGGGAGAAATTATTAAGGTCCAAGGCATC
ATGCAGATGCAGAGGAGGAAGAATCAATCAAATAAAATCTATTATGTATATTCATTCATATTGTGCCATGTATGTATGCA
TGGGTGTCACACCGCACCACATGTTGCAAGAAAAATGAAAGAGAAGCTAGTTACTACTACCTCCATACATATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53108.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis