Browse Element(s) Details


Os.53223.1.S1_at

Description gb:AK071451.1
DB_XREF= gi:32981474
TID=Os.53223.1
CNT=2
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53223 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023098H22, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023098H22, full insert sequence.
FL= gb:AK071451.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4607910/11phagocytosis and cell motility protein ELMO1, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46050Os.38153.1.S1_at11/114+27056244..27063655Plasmid Maintenance Protein containing protein, expressed
LOC_Os04g46060Os.53641.1.S1_at11/114+27065188..27071895WRKY DNA binding domain containing protein, expressed
LOC_Os04g46060OsAffx.26480.1.S1_s_at11/114+27065188..27071895WRKY DNA binding domain containing protein, expressed
LOC_Os04g46079Os.53223.1.S1_at10/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46079OsAffx.9045.1.S1_x_at4/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46079OsAffx.9045.1.S1_at3/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46079OsAffx.22492.1.S1_x_at1/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46079OsAffx.22492.1.S1_at1/114+27081743..27097920phagocytosis and cell motility protein ELMO1, putative, expressed
LOC_Os04g46100Os.20424.1.S1_s_at11/114+27099226..27104321expressed protein
LOC_Os04g46100OsAffx.14289.1.S1_at8/114+27099226..27104321expressed protein
LOC_Os04g46110OsAffx.14290.1.S1_at10/114+27107534..27108415expressed protein
LOC_Os04g46120OsAffx.26481.1.S1_at11/114+27109682..27110340Plastocyanin-like domain containing protein
LOC_Os04g46130Os.49877.1.S1_at10/114+27114610..27116113Plastocyanin-like domain containing protein, expressed
LOC_Os04g46140OsAffx.14291.1.S1_x_at11/114+27117486..27118821expressed protein
LOC_Os04g46150OsAffx.13041.3.S1_at10/114+27120953..27121882transposon protein, putative, unclassified
LOC_Os04g46150OsAffx.13041.1.S1_x_at5/114+27120953..27121882transposon protein, putative, unclassified
LOC_Os04g46150Os.28110.1.S1_x_at1/114+27120953..27121882transposon protein, putative, unclassified
LOC_Os04g46150OsAffx.13041.1.S1_at1/114+27120953..27121882transposon protein, putative, unclassified
LOC_Os04g46160OsAffx.14292.1.S1_at11/114+27122323..27124567expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53223.1.S1_at--95--9071Chr04:27082363..27082387 (25 bp)
TGCATAACCTTTAAGCTCATGGATC
LOC_Os04g46079
Os.53223.1.S1_at--785--3751Chr04:27082348..27082372 (25 bp)
CTCATGGATCACAAATGGCTTGAAA
LOC_Os04g46079
Os.53223.1.S1_at--668--8291Chr04:27082332..27082356 (25 bp)
GGCTTGAAATGCACGCCAATTATAT
LOC_Os04g46079
Os.53223.1.S1_at--936--591NONE
ATGCGGTTATCAAATCTACACGACG
NONE
Os.53223.1.S1_at--788--3731Chr04:27082190..27082214 (25 bp)
CTACACGACGACAACTTGAGAGGGA
LOC_Os04g46079
Os.53223.1.S1_at--92--10291Chr04:27082116..27082140 (25 bp)
TTTCTCGACCGCTAGCAACTGAATT
LOC_Os04g46079
Os.53223.1.S1_at--733--4271Chr04:27082074..27082098 (25 bp)
CCTCGCCACAGGTAGTAAATCTCAA
LOC_Os04g46079
Os.53223.1.S1_at--563--2271Chr04:27082058..27082082 (25 bp)
AAATCTCAATATACAGTCACCTGCA
LOC_Os04g46079
Os.53223.1.S1_at--216--1171Chr04:27082044..27082068 (25 bp)
AGTCACCTGCAAACCAAGTACAGCG
LOC_Os04g46079
Os.53223.1.S1_at--236--2811Chr04:27082029..27082053 (25 bp)
AAGTACAGCGAACTCGATTCGTGGG
LOC_Os04g46079
Os.53223.1.S1_at--250--5851Chr04:27081996..27082020 (25 bp)
GACCATGGACGTGTAACGTGTGCCA
LOC_Os04g46079
Target Sequence 
TGCATAACCTTTAAGCTCATGGATCACAAATGGCTTGAAATGCACGCCAATTATATGGATTTCAATGCGGTTATCAAATC
TACACGACGACAACTTGAGAGGGAGTTACTNGCTTGAAGATATCCAACGAATTGAGGACATGCCATCNTACAGGTTTCTC
GACCGCTAGCAACTGAATTCTCAGTTTCTCACTTAACCTCGCCACAGGTAGTAAATCTCAATATACAGTCACCTGCAAAC
CAAGTACAGCGAACTCGATTCGTGGGGACTCCAGGACCATGGACGTGTAACGTGTGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53223.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis