Browse Element(s) Details


Os.53633.1.S1_x_at

Description gb:AK073673.1
DB_XREF= gi:32983696
TID=Os.53633.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.53633 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033047P09, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033047P09, full insert sequence.
FL= gb:AK073673.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g3831011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38240Os.24174.1.A1_at11/118+24105445..24109269transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g38250OsAffx.6065.1.S1_x_at11/118+24112203..24112802expressed protein
LOC_Os08g38260OsAffx.17395.1.S1_at11/118+24117056..24118347hypothetical protein
LOC_Os08g38270Os.55554.1.S1_at11/118+24119910..24121014Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
LOC_Os08g38270OsAffx.6066.1.S1_s_at11/118+24119910..24121014Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
LOC_Os08g38280Os.52746.1.S1_at11/118+24122115..24123689expressed protein
LOC_Os08g38289NANA8+24125232..24126109hypothetical protein
LOC_Os08g38300OsAffx.29587.1.S1_s_at11/118+24128481..24129312Histone H2B, putative, expressed
LOC_Os08g38300OsAffx.10929.1.S1_x_at2/118+24128481..24129312Histone H2B, putative, expressed
LOC_Os08g38310Os.53633.1.S1_x_at11/118+24130321..24137033expressed protein
LOC_Os08g38310OsAffx.17396.1.S1_at10/118+24130321..24137033expressed protein
LOC_Os08g38310OsAffx.17396.1.S1_x_at9/118+24130321..24137033expressed protein
LOC_Os08g38320Os.8660.1.S1_at11/118+24141188..24144560Protein kinase G11A, putative, expressed
LOC_Os08g38330OsAffx.32149.5.S1_at11/118+24146225..24147826F-box domain containing protein
LOC_Os08g38340Os.56244.1.S1_at11/118+24150017..24151534expressed protein
LOC_Os08g38350OsAffx.32149.1.S1_x_at11/118+24152694..24154403hypothetical protein
LOC_Os08g38350OsAffx.32149.1.S1_at11/118+24152694..24154403hypothetical protein
LOC_Os08g38350Os.29072.1.S1_at2/118+24152694..24154403hypothetical protein
LOC_Os08g38360OsAffx.32149.2.S1_at11/118+24155309..24156110F-box domain containing protein
LOC_Os08g38370OsAffx.17399.1.S1_at11/118+24158893..24161871Zinc finger C-x8-C-x5-C-x3-H type family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.53633.1.S1_x_at--346--5311Chr08:24131678..24131702 (25 bp)
GAAGGACCTGATTCTGTGTTCACTC
LOC_Os08g38310
Os.53633.1.S1_x_at--467--8791Chr08:24131694..24131718 (25 bp)
TGTTCACTCCACTGTCTCAAAAGGA
LOC_Os08g38310
Os.53633.1.S1_x_at--435--6351Chr08:24131726..24131750 (25 bp)
GATGCGGGTGATACTGTTTCTCTTA
LOC_Os08g38310
Os.53633.1.S1_x_at--456--851Chr08:24131795..24131819 (25 bp)
ATGGCTAGCCCACAGTTTGACAATG
LOC_Os08g38310
Os.53633.1.S1_x_at--779--9651Chr08:24132014..24132038 (25 bp)
TCAGAATGTCATGTGCGGTCTCCTC
LOC_Os08g38310
Os.53633.1.S1_x_at--1067--4331Chr08:24132038..24132062 (25 bp)
CCATGTGATGGATCTTCTCTTCGAC
LOC_Os08g38310
Os.53633.1.S1_x_at--112--5831Chr08:24132060..24132084 (25 bp)
GACCTGATTATCTGGCCAATGCTAT
LOC_Os08g38310
Os.53633.1.S1_x_at--780--9651Chr08:24132149..24132173 (25 bp)
TCAGAATGTCATGTGCTGTCTCCTC
LOC_Os08g38310
Os.53633.1.S1_x_at--126--791Chr08:24132175..24132199 (25 bp)
ATGTGATGGATCTTCTCTGCAACCT
LOC_Os08g38310
Os.53633.1.S1_x_at--96--5171Chr08:24132193..24132217 (25 bp)
GCAACCTGATTATCTGGCCAGTACT
LOC_Os08g38310
Os.53633.1.S1_x_at--983--8431Chr08:24132208..24132232 (25 bp)
GGCCAGTACTGTTTGTGAAGCTCCA
LOC_Os08g38310
Target Sequence 
GAAGGACCTGATTCTGTGTTCACTCCACTGTCTCAAAAGGAAATAGCGGATGCGGGTGATACTGTTTCTCTTATGGAGCC
GATTGCTAAAACAGAATCTGTTGCAGGGCTGATTTCTATGGCTAGCCCACAGTTTGACAATGATCGATTGCAAACTAATT
TGCTGGAAGGACCTGATTCAGTGCCAACTTCACTGTCTCAAGCAGATGCAAGACATACTGCTGAAACTGATTCTGTTGAA
ATCCTGGACCAAGAAGAAGATACTGATACACCTAGAGAATACAGTTTTCCTGATAAGAGAGTTGATGAAAACTTGAAGAT
TCTTGAACATCAGAGCTCAGAATGTCATGTGCGGTCTCCTCCATGTGATGGATCTTCTCTTCGACCTGATTATCTGGCCA
ATGCTATTTGTGAAGCTCCAAAAATGTTGTCAACGCCACAGGAGAATATGCTGGGTGACGAACAGCAGGGCTCAGAATGT
CATGTGCTGTCTCCTCCATGTGATGGATCTTCTCTGCAACCTGATTATCTGGCCAGTACTGTTTGTGAAGCTCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.53633.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis