Browse Element(s) Details


Os.54510.1.S1_at

Description gb:AK105489.1
DB_XREF= gi:32990698
TID=Os.54510.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54510 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-127-B11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-127-B11, full insert sequence.
FL= gb:AK105489.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4464011/11protein arginine N-methyltransferase 3, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g44560OsAffx.5636.1.S1_at11/117+26604045..26609628AMP-binding enzyme family protein
LOC_Os07g44570OsAffx.28901.2.S1_x_at11/117+26610066..26610618Coleoptile phototropism protein 1, putative
LOC_Os07g44570OsAffx.28901.1.S1_x_at1/117+26610066..26610618Coleoptile phototropism protein 1, putative
LOC_Os07g44580OsAffx.28901.4.S1_x_at11/117+26610959..26611705phototropic-responsive NPH3 family protein, putative
LOC_Os07g44590Os.56899.1.S1_at11/117+26613798..26615100Peroxidase family protein, expressed
LOC_Os07g44600NANA7+26615540..26616371peroxidase, putative
LOC_Os07g44610Os.8636.1.S1_at11/117+26616961..26620328pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os07g44610OsAffx.9594.1.S1_at1/117+26616961..26620328pyrrolidone-carboxylate peptidase family protein, expressed
LOC_Os07g44620Os.37651.1.S1_at11/117+26626783..26629563Eukaryotic translation initiation factor 6, putative, expressed
LOC_Os07g44630OsAffx.28902.1.S1_s_at11/117+26629637..26631991Thymidylate kinase family protein, expressed
LOC_Os07g44640Os.54510.1.S1_at11/117+26632178..26635547protein arginine N-methyltransferase 3, putative, expressed
LOC_Os07g44650Os.12246.1.S1_at11/117+26635832..26638211Complex 1 protein containing protein, expressed
LOC_Os07g44660Os.16887.1.S1_at11/117+26638972..26643649xylulose kinase, putative, expressed
LOC_Os07g44670OsAffx.28903.1.S1_x_at9/117+26644926..26652033hypothetical protein
LOC_Os07g44670OsAffx.28903.2.S1_x_at3/117+26644926..26652033hypothetical protein
LOC_Os07g44670Os.50232.1.S1_x_at1/117+26644926..26652033hypothetical protein
LOC_Os07g44680OsAffx.16712.1.S1_at11/117+26660432..26661079hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0008168molecular_functionmethyltransferase activity
GO:0016274molecular_functionprotein-arginine N-methyltransferase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54510.1.S1_at--1113--7151Chr07:26634952..26634976 (25 bp)
GTCTCATCTGCGTCAGTTGGCACAG
LOC_Os07g44640
Os.54510.1.S1_at--242--6311Chr07:26634976..26635000 (25 bp)
GATGAGTGCCCAGCTGTGATGATCA
LOC_Os07g44640
Os.54510.1.S1_at--188--411Chr07:26634997..26635021 (25 bp)
ATCAGATCCCGCATCAGCATTGTGA
LOC_Os07g44640
Os.54510.1.S1_at--106--5951Chr07:26635030..26635054 (25 bp)
GAGCACCGCAGCATAGACATATCGA
LOC_Os07g44640
Os.54510.1.S1_at--523--6971Chr07:26635091..26635115 (25 bp)
GTAGCTGGCCTGTTCAGATCTTCAA
LOC_Os07g44640
Os.54510.1.S1_at--218--2251Chr07:26635151..26635175 (25 bp)
AAATTTTGTTTCGTGCTTTGCTCCT
LOC_Os07g44640
Os.54510.1.S1_at--306--4791Chr07:26635170..26635194 (25 bp)
GCTCCTCACTGGTTTTGAGCAAGGA
LOC_Os07g44640
Os.54510.1.S1_at--363--7951Chr07:26635192..26635216 (25 bp)
GGATACTACCCACAGCAAGTCTTAG
LOC_Os07g44640
Os.54510.1.S1_at--689--2571Chr07:26635262..26635286 (25 bp)
AACGGCATCCCCACTGAAGTTTTGT
LOC_Os07g44640
Os.54510.1.S1_at--1116--10231Chr07:26635381..26635405 (25 bp)
TTTGGCTATTTCTGCACGTGAACTG
LOC_Os07g44640
Os.54510.1.S1_at--58--8571Chr07:26635478..26635502 (25 bp)
TGGATACCAGTTCACTTCAGTTTCT
LOC_Os07g44640
Target Sequence 
GTCTCATCTGCGTCAGTTGGCACAGATGAGTGCCCAGCTGTGATGATCAGATCCCGCATCAGCATTGTGAGGGCCTCTGA
GCACCGCAGCATAGACATATCGATTGAAACTACAGGAATCAGCTCAGATGGCAGGAAGCGTAGCTGGCCTGTTCAGATCT
TCAACCTGTGAGCAAGGAGCCAAGGATACCTTTGGGTATAAATTTTGTTTCGTGCTTTGCTCCTCACTGGTTTTGAGCAA
GGATACTACCCACAGCAAGTCTTAGCTTTTGATTGGGTCCTCAAATCTCAAGTTCTGTACGCTGAAACAGAACGGCATCC
CCACTGAAGTTTTGTGCAATGGTGAGCCTGAAAACAGGCCAGATTGAAGCGCTGTGGAATGGTCAGGGTGAAAAAGTTCA
TGGGATCGAGACTGAGTTGCAGTTTTTTTTTGGCTATTTCTGCACGTGAACTGAAAGATATATCTTGTAGTGATGTTTGA
GATATGTATCAGTATTTTACAATGATATCAGAATTCAGATTCATTTGGATACCAGTTCACTTCAGTTTCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54510.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis