Browse Element(s) Details


Os.54717.1.S1_at

Description gb:AK109709.1
DB_XREF= gi:32994918
TID=Os.54717.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54717 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-145-G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-145-G11, full insert sequence.
FL= gb:AK109709.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g2194011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g21890Os.23947.1.A1_at11/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21890Os.12702.1.S1_at11/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21890OsAffx.19766.1.S1_x_at7/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21890Os.17137.1.S1_at1/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21890Os.27627.1.S1_at1/1112+12319021..12327551PTEN, putative, expressed
LOC_Os12g21900Os.56089.1.S1_at1/1112+12331075..12332472retrotransposon protein, putative, unclassified
LOC_Os12g21910NANA12+12333606..12338741retrotransposon protein, putative, unclassified
LOC_Os12g21920OsAffx.19768.1.S1_at10/1112+12341793..12342834hypothetical protein
LOC_Os12g21930Os.54668.1.S1_at9/1112+12346798..12349721pentatricopeptide, putative, expressed
LOC_Os12g21930Os.25308.1.A1_at1/1112+12346798..12349721pentatricopeptide, putative, expressed
LOC_Os12g21940Os.54717.1.S1_at11/1112+12351717..12354198expressed protein
LOC_Os12g21950OsAffx.19769.1.S1_at11/1112+12357633..12358301hypothetical protein
LOC_Os12g21960OsAffx.19770.1.S1_at7/1112+12358727..12359772hypothetical protein
LOC_Os12g21970NANA12+12361949..12362485Transposable element protein, putative, Retrotrans_gag
LOC_Os12g21980NANA12+12364635..12366152retrotransposon, putative, centromere-specific
LOC_Os12g21990OsAffx.15648.1.S1_at1/1112+12367030..12369711retrotransposon protein, putative, unclassified
LOC_Os12g22000OsAffx.31827.1.S1_at11/1112+12370570..12373181hypothetical protein
LOC_Os12g22000OsAffx.32278.1.A1_at2/1112+12370570..12373181hypothetical protein
LOC_Os12g22000OsAffx.13030.1.S1_x_at1/1112+12370570..12373181hypothetical protein
LOC_Os12g22010Os.50949.2.S1_at11/1112+12373402..12379066hypothetical protein
LOC_Os12g22010Os.50949.1.S1_at11/1112+12373402..12379066hypothetical protein
LOC_Os12g22010Os.50949.2.S1_x_at11/1112+12373402..12379066hypothetical protein
LOC_Os12g22010Os.52566.1.S1_at11/1112+12373402..12379066hypothetical protein
LOC_Os12g22010OsAffx.7653.1.S1_at9/1112+12373402..12379066hypothetical protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54717.1.S1_at--618--5411Chr12:12352259..12352283 (25 bp)
GAAGCTGGTGTACCCGCATATGTTT
LOC_Os12g21940
Os.54717.1.S1_at--886--4951Chr12:12352244..12352268 (25 bp)
GCATATGTTTCTGGGCTCCATCCAA
LOC_Os12g21940
Os.54717.1.S1_at--17--10391Chr12:12352157..12352181 (25 bp)
TTATTTTTCGCCACCCAGCTAGCAA
LOC_Os12g21940
Os.54717.1.S1_at--528--2171Chr12:12352111..12352135 (25 bp)
ACACGATGAAGCTGGTCTATGGGAT
LOC_Os12g21940
Os.54717.1.S1_at--433--231Chr12:12352070..12352094 (25 bp)
ATATATGCGTCCAACCGATGCAGCA
LOC_Os12g21940
Os.54717.1.S1_at--37--7771Chr12:12352013..12352037 (25 bp)
GGTGAGTTTACAACCATCGTATGGC
LOC_Os12g21940
Os.54717.1.S1_at--134--6931Chr12:12351995..12352019 (25 bp)
GTATGGCTTACAGCAGAGCACCTTT
LOC_Os12g21940
Os.54717.1.S1_at--620--5031Chr12:12351983..12352007 (25 bp)
GCAGAGCACCTTTACCAACTTCAAA
LOC_Os12g21940
Os.54717.1.S1_at--638--3151Chr12:12351931..12351955 (25 bp)
AATTCTATCACTCGTTTCATCTGCA
LOC_Os12g21940
Os.54717.1.S1_at--1087--7871Chr12:12351828..12351852 (25 bp)
GGTTAACTTCTATACTTTTCTGTGT
LOC_Os12g21940
Os.54717.1.S1_at--1049--3571Chr12:12351773..12351797 (25 bp)
CATTTAACCATCTCTTTATCTGTAG
LOC_Os12g21940
Target Sequence 
GAAGCTGGTGTACCCGCATATGTTTCTGGGCTCCATCCAAGTCAGAAACTTGCCAACATGCTACATGACAAGGAGGTCAC
ACAAGATCTGATATCTAACCGTTTATTTTTCGCCACCCAGCTAGCAAAACGACTGCTTGAAAGAGATGACACGATGAAGC
TGGTCTATGGGATCTGGGTAGATTTTCTTATATATGCGTCCAACCGATGCAGCAGGGAGTCCCATGCCAAGAGGCTCAAC
AACGATGGTGAGTTTACAACCATCGTATGGCTTACAGCAGAGCACCTTTACCAACTTCAAATCTATGATGCACAGGAAAA
GCATCATTAATTCTATCACTCGTTTCATCTGCAGTGACAACATATGTGAATATTTACATCGATCATGTTTGTTATTTTTT
ATATTTTCCAATTCAACTAACCTACATGCTAGGTTAACTTCTATACTTTTCTGTGTTTTAATTGTACTTTTGATCAATTT
CTTTACCATTTAACCATCTCTTTATCTGTAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54717.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis