Browse Element(s) Details


Os.54858.1.S1_at

Description gb:AK106924.1
DB_XREF= gi:32992133
TID=Os.54858.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54858 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-119-B08, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-B08, full insert sequence.
FL= gb:AK106924.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4066011/11Zinc finger, C2H2 type family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40614Os.7567.1.S1_at11/1110+21456448..21457347Protease inhibitor/seed storage/LTP family protein, expressed
LOC_Os10g40620Os.23252.1.S1_at11/1110+21457941..21460559expressed protein
LOC_Os10g40620Os.21046.1.S1_at1/1110+21457941..21460559expressed protein
LOC_Os10g40620OsAffx.30891.1.S1_x_at1/1110+21457941..21460559expressed protein
LOC_Os10g40630OsAffx.20144.1.S1_at9/1110+21464775..21465436NA
LOC_Os10g40640Os.46627.1.S1_at11/1110+21469242..21472929Glycogenin, putative, expressed
LOC_Os10g40650Os.23250.1.S1_x_at11/1110+21472161..21474628expressed protein
LOC_Os10g40650OsAffx.30738.1.S1_at11/1110+21472161..21474628expressed protein
LOC_Os10g40650Os.18752.2.S1_x_at1/1110+21472161..21474628expressed protein
LOC_Os10g40660Os.54858.1.S1_at11/1110+21479586..21481267Zinc finger, C2H2 type family protein, expressed
LOC_Os10g40680NANA10+21492586..21494013expressed protein
LOC_Os10g40700Os.2404.1.S1_at11/1110+21500469..21502007Beta-expansin 1a precursor, putative, expressed
LOC_Os10g40710Os.2373.1.S1_at11/1110+21506246..21507957Beta-expansin 1a precursor, putative, expressed
LOC_Os10g40710OsAffx.22529.1.S1_s_at1/1110+21506246..21507957Beta-expansin 1a precursor, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0045449biological_processregulation of transcription
GO:0003676molecular_functionnucleic acid binding
GO:0003700molecular_functiontranscription factor activity
GO:0008270molecular_functionzinc ion binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54858.1.S1_at--1047--6051Chr10:21479883..21479907 (25 bp)
GAGTTCGCCAGCACGAGACAGTGAC
LOC_Os10g40660
Os.54858.1.S1_at--1129--9151Chr10:21479826..21479957 (25 bp)
TGCCGACTCCAGATCACCAAGAAAT
LOC_Os10g40660
Os.54858.1.S1_at--509--5591Chr10:21479806..21479830 (25 bp)
GAAATCGGTAGGACAAACTGCTTCC
LOC_Os10g40660
Os.54858.1.S1_at--39--2391Chr10:21479792..21479816 (25 bp)
AAACTGCTTCCTAGCTGCATGCAAG
LOC_Os10g40660
Os.54858.1.S1_at--316--4771Chr10:21479779..21479803 (25 bp)
GCTGCATGCAAGGATGGATTCATTC
LOC_Os10g40660
Os.54858.1.S1_at--95--111Chr10:21479758..21479782 (25 bp)
ATTCGAGGTAAGAAGCTCTGCATCT
LOC_Os10g40660
Os.54858.1.S1_at--267--4811Chr10:21479744..21479768 (25 bp)
GCTCTGCATCTCTTGCAAGAACCAG
LOC_Os10g40660
Os.54858.1.S1_at--723--5951Chr10:21479705..21479729 (25 bp)
GAGAATTCTCTGTCTTGTTGCTTAA
LOC_Os10g40660
Os.54858.1.S1_at--204--8811Chr10:21479690..21479714 (25 bp)
TGTTGCTTAAGCTTCAGTTACTGTT
LOC_Os10g40660
Os.54858.1.S1_at--1144--6671Chr10:21479662..21479686 (25 bp)
GTTGCTGCTATTGCTAGAGCTGAAA
LOC_Os10g40660
Os.54858.1.S1_at--347--7571Chr10:21479600..21479624 (25 bp)
GGGCGCTCTGTATCTAAATCAAATT
LOC_Os10g40660
Target Sequence 
GAGTTCGCCAGCACGAGACAGTGACCACACACCACCAACCAGCTGATCATCCATGGCTGCCGACTCCAGATCACCAAGAA
ATCGGTAGGACAAACTGCTTCCTAGCTGCATGCAAGGATGGATTCATTCGAGGTAAGAAGCTCTGCATCTCTTGCAAGAA
CCAGAATACCAGATCATGGAGAATTCTCTGTCTTGTTGCTTAAGCTTCAGTTACTGTTGCTGTTGCTGCTATTGCTAGAG
CTGAAAATTCAGTTGAGCAGCTGAAAATTCTTTTTTTCATTTTGGGCGCTCTGTATCTAAATCAAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54858.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis