Browse Element(s) Details


Os.55329.1.S1_at

Description gb:AK107880.1
DB_XREF= gi:32993089
TID=Os.55329.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55329 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-134-D05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-134-D05, full insert sequence.
FL= gb:AK107880.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4204011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41980Os.2375.1.S1_at11/114+24654926..24656873stress-induced protein OZI1 precursor, putative, expressed
LOC_Os04g41990OsAffx.26424.1.S1_at11/114+24656916..24658769Autophagocytosis associated protein, C-terminal domain containing protein, expressed
LOC_Os04g42000Os.53032.1.S1_at11/114+24659050..246626336,7-dimethyl-8-ribityllumazine synthase family protein, expressed
LOC_Os04g42010Os.12348.3.S1_a_at11/114+24663681..24667614La domain containing protein, expressed
LOC_Os04g42020Os.46598.1.S1_a_at11/114+24670888..24672388CONSTANS, putative, expressed
LOC_Os04g42030Os.38386.1.A1_at11/114+24675262..24677405expressed protein
LOC_Os04g42040OsAffx.14236.1.S1_at11/114+24678531..24681661expressed protein
LOC_Os04g42040Os.55329.1.S1_at11/114+24678531..24681661expressed protein
LOC_Os04g42050OsAffx.26425.1.S1_at11/114+24686090..24686591hypothetical protein
LOC_Os04g42060Os.3920.1.S1_at11/114+24687472..24690072Cytochrome c oxidase polypeptide VIb, putative, expressed
LOC_Os04g42080OsAffx.23915.1.S1_at5/114+24693938..24694650hypothetical protein
LOC_Os04g42090Os.4786.1.S1_at11/114+24695959..24699691S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os04g42090Os.4786.1.S2_at11/114+24695959..24699691S-adenosylmethionine decarboxylase proenzyme, putative, expressed
LOC_Os04g42100Os.5796.1.S1_at8/114+24701330..24705559transposon protein, putative, CACTA, En/Spm sub-class, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55329.1.S1_at--900--5791Chr04:24681466..24681490 (25 bp)
GACGCACTGCATGAACCAGACGCGG
LOC_Os04g42040
Os.55329.1.S1_at--1043--1711Chr04:24681480..24681504 (25 bp)
ACCAGACGCGGTTTAGCTGATGAAA
LOC_Os04g42040
Os.55329.1.S1_at--1062--2271Chr04:24681507..24681531 (25 bp)
AAATGTTCAGGCTTAACTACGGCCA
LOC_Os04g42040
Os.55329.1.S1_at--829--2531Chr04:24681521..24681545 (25 bp)
AACTACGGCCACTTCAGTCATATAA
LOC_Os04g42040
Os.55329.1.S1_at--640--2051Chr04:24681531..24681555 (25 bp)
ACTTCAGTCATATAACAGCTGCGAA
LOC_Os04g42040
Os.55329.1.S1_at--405--3371Chr04:24681546..24681570 (25 bp)
CAGCTGCGAAAATCTGTCATGCATC
LOC_Os04g42040
Os.55329.1.S1_at--940--471Chr04:24681557..24681581 (25 bp)
ATCTGTCATGCATCTTATCGATTGG
LOC_Os04g42040
Os.55329.1.S1_at--899--3651Chr04:24681570..24681594 (25 bp)
CTTATCGATTGGAGCTTGTTATTTT
LOC_Os04g42040
Os.55329.1.S1_at--314--10431Chr04:24681597..24681621 (25 bp)
TTAGTTCTAATTGTTCCTCCATGGT
LOC_Os04g42040
Os.55329.1.S1_at--355--3171Chr04:24681605..24681629 (25 bp)
AATTGTTCCTCCATGGTTTATAATA
LOC_Os04g42040
Os.55329.1.S1_at--824--9031Chr04:24681625..24681649 (25 bp)
TAATAAATAATGCAACTAACCGCCC
LOC_Os04g42040
Target Sequence 
GACGCACTGCATGAACCAGACGCGGTTTAGCTGATGAAACGAAATGTTCAGGCTTAACTACGGCCACTTCAGTCATATAA
CAGCTGCGAAAATCTGTCATGCATCTTATCGATTGGAGCTTGTTATTTTTTTTAGTTCTAATTGTTCCTCCATGGTTTAT
AATAAATAATGCAACTAACCGCCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55329.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis