Browse Element(s) Details


Os.6665.1.S1_at

Description gb:AK105544.1
DB_XREF= gi:32990753
TID=Os.6665.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.6665 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-128-A02, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-128-A02, full insert sequence.
FL= gb:AK105544.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0663011/11Peroxidase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g06588Os.53125.1.S1_at10/112+3311243..3313540SNF2 domain-containing protein, putative, expressed
LOC_Os02g06592Os.16806.1.S1_at11/112+3313843..3318382TATA-binding-protein-associated factor 172, putative, expressed
LOC_Os02g06600OsAffx.24133.2.S1_at3/112+3323236..3326723Leucine Rich Repeat family protein
LOC_Os02g06600Os.34424.1.S1_at2/112+3323236..3326723Leucine Rich Repeat family protein
LOC_Os02g06610OsAffx.2524.2.S1_at11/112+3328662..3330204expressed protein
LOC_Os02g06620OsAffx.24133.2.S1_at11/112+3332464..3335806Leucine Rich Repeat family protein
LOC_Os02g06630Os.6665.1.S1_at11/112+3336125..3339092Peroxidase family protein, expressed
LOC_Os02g06640Os.22660.3.S1_x_at11/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.22660.1.S1_x_at11/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.57479.1.S1_x_at10/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.22660.2.S1_x_at4/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06640Os.25748.1.S1_x_at1/112+3340325..3343058polyubiquitin containing 7 ubiquitin monomers, putative, expressed
LOC_Os02g06650Os.6678.1.S1_at4/112+3345151..3346400COX VIIa, putative
LOC_Os02g06660OsAffx.24135.1.S1_at10/112+3351125..3352608P21-Rho-binding domain containing protein
LOC_Os02g06670OsAffx.24136.1.S1_at11/112+3353562..3354820transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g06670OsAffx.2526.1.S1_at1/112+3353562..3354820transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os02g06690OsAffx.2526.1.S1_at11/112+3357043..3358155early salt stress and cold acclimation-induced protein 2-1, putative, expressed
LOC_Os02g06700Os.7876.1.S1_at11/112+3358909..336071840S ribosomal protein S14, putative, expressed
LOC_Os02g06710OsAffx.24138.1.S1_s_at11/112+3362058..3362715expressed protein
LOC_Os02g06720OsAffx.24139.1.S1_at11/112+3362819..3369515Beige/BEACH domain containing protein, expressed
LOC_Os02g06720Os.19805.1.S1_at10/112+3362819..3369515Beige/BEACH domain containing protein, expressed
LOC_Os02g06720Os.23284.1.S1_at9/112+3362819..3369515Beige/BEACH domain containing protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0009269biological_processresponse to desiccation
GO:0009409biological_processresponse to cold
GO:0042538biological_processhyperosmotic salinity response
GO:0005634cellular_componentnucleus
GO:0005737cellular_componentcytoplasm
GO:0005783cellular_componentendoplasmic reticulum
GO:0004601molecular_functionperoxidase activity
GO:0016757molecular_functiontransferase activity, transferring glycosyl groups
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6665.1.S1_at--685--6192Chr02:3336494..3336518 (25 bp)
GAGGAACTGCGCTGTCGTGAACAGC
LOC_Os02g06630
Os.6665.1.S1_at--435--7351Chr02:3336478..3336502 (25 bp)
GTGAACAGCGGCCACTGATCAAAAG
LOC_Os02g06630
Os.6665.1.S1_at--467--6652Chr02:3336449..3336473 (25 bp)
GTTGATTTGCAATTCTTCCTGGGAT
LOC_Os02g06630
Os.6665.1.S1_at--440--3612Chr02:3336435..3336459 (25 bp)
CTTCCTGGGATAGCGTGATTTTGTT
LOC_Os02g06630
Os.6665.1.S1_at--170--6551Chr02:3336419..3336443 (25 bp)
GATTTTGTTCTTACGATTTCTTCAC
LOC_Os02g06630
Os.6665.1.S1_at--737--1871Chr02:3336407..3336431 (25 bp)
ACGATTTCTTCACTTTTGTCATTTG
LOC_Os02g06630
Os.6665.1.S1_at--460--3952Chr02:3336313..3336337 (25 bp)
CGGCAAAGCTGTGTTCTTTTGCTTT
LOC_Os02g06630
Os.6665.1.S1_at--655--6731Chr02:3336301..3336325 (25 bp)
GTTCTTTTGCTTTGAAGTGTGCTGT
LOC_Os02g06630
Os.6665.1.S1_at--67--3131Chr02:3336204..3336228 (25 bp)
AATTCTCCGAATTAGCGTCAAATGA
LOC_Os02g06630
Os.6665.1.S1_at--232--5331Chr02:3336181..3336205 (25 bp)
GAAGTCTGTATGCATGCACAGGTAA
LOC_Os02g06630
Os.6665.1.S1_at--840--2752Chr02:3336132..3336156 (25 bp)
AAGACAGCCATGATGTATGCTACTT
LOC_Os02g06630
Target Sequence 
GAGGAACTGCGCTGTCGTGAACAGCGGCCACTGATCAAAAGGGGAGTTGATTTGCAATTCTTCCTGGGATAGCGTGATTT
TGTTCTTACGATTTCTTCACTTTTGTCATTTGAATTTGGTGAAATTCTAGTAGAAATTTTNCTGCGCGTGTTCTTGTTGT
GTTCAGTGTCGTTGCTGCAACCGGCAAAGCTGTGTTCTTTTGCTTTGAAGTGTGCTGTAGTAATTTATAGCTGATGNGAA
AAAAAAAAACAGNATACATACAGTTTNCNGTNTGAACAGAAAATAAGNCAAAATTCTCCGAATTAGCGTCAAATGAAGTC
TGTATGCATGCACAGGTAATNACAAAGCTTGCAAATACATCAAAAGACAGCCATGATGTATGCTACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6665.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis