Browse Element(s) Details


Os.6799.1.S1_at

Description gb:AK061703.1
DB_XREF= gi:32971721
TID=Os.6799.1
CNT=38
FEA=FLmRNA
TIER=FL+Stack
STK=19
UG=Os.6799 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative phragmoplastin (OSJNBa0057L21.1), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-037-E04, full insert sequence.
FL= gb:AK073186.1 gb:AK061703.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g4182011/11Dynamin-related protein 1C, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g41770Os.46400.2.S1_x_at11/1110+22148953..22153115expressed protein
LOC_Os10g41780Os.22029.1.S1_a_at11/1110+22152509..22156831chlorophyll a oxygenase, putative, expressed
LOC_Os10g41790Os.46482.1.S1_at10/1110+22159566..22162537intron maturase, type II family protein, putative, expressed
LOC_Os10g41800Os.54414.1.S1_at11/1110+22168202..22169570expressed protein
LOC_Os10g41800Os.5586.1.S1_at1/1110+22168202..22169570expressed protein
LOC_Os10g41810NANA10+22172933..22173166hypothetical protein
LOC_Os10g41820Os.6799.1.S1_at11/1110+22173744..22180442Dynamin-related protein 1C, putative, expressed
LOC_Os10g41829OsAffx.20127.1.A1_at11/1110+22181333..22183609F-box domain containing protein
LOC_Os10g41829Os.29966.1.S1_at1/1110+22181333..22183609F-box domain containing protein
LOC_Os10g41829Os.29966.1.S1_x_at1/1110+22181333..22183609F-box domain containing protein
LOC_Os10g41838Os.20614.1.S1_at11/1110+22186368..22188274F-box protein interaction domain containing protein, expressed
LOC_Os10g41838Os.20614.3.S1_x_at11/1110+22186368..22188274F-box protein interaction domain containing protein, expressed
LOC_Os10g41838Os.20614.4.S1_x_at11/1110+22186368..22188274F-box protein interaction domain containing protein, expressed
LOC_Os10g41850Os.11475.2.S1_at11/1110+22190385..22191886F-box domain containing protein, expressed
LOC_Os10g41850Os.11475.3.S1_x_at11/1110+22190385..22191886F-box domain containing protein, expressed
LOC_Os10g41850Os.11475.3.S1_at11/1110+22190385..22191886F-box domain containing protein, expressed
LOC_Os10g41850Os.27237.3.A1_x_at1/1110+22190385..22191886F-box domain containing protein, expressed
LOC_Os10g41860Os.11475.1.S1_a_at11/1110+22192336..22195173expressed protein
LOC_Os10g41860Os.11475.1.S1_at11/1110+22192336..22195173expressed protein
LOC_Os10g41870Os.53785.1.S1_at11/1110+22201456..22204690expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0000266biological_processmitochondrial fission
GO:0000911biological_processcytokinesis by cell plate formation
GO:0007005biological_processmitochondrion organization and biogenesis
GO:0009793biological_processembryonic development (sensu Magnoliophyta)
GO:0009920biological_processcell plate formation (sensu Magnoliophyta)
GO:0010051biological_processvascular tissue pattern formation (sensu Tracheophyta)
GO:0010091biological_processtrichome branching (sensu Magnoliophyta)
GO:0010152biological_processpollen maturation
GO:0016192biological_processvesicle-mediated transport
GO:0005874cellular_componentmicrotubule
GO:0009504cellular_componentcell plate
GO:0009535cellular_componentthylakoid membrane (sensu Viridiplantae)
GO:0003924molecular_functionGTPase activity
GO:0005515molecular_functionprotein binding
GO:0005525molecular_functionGTP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6799.1.S1_at--752--1991Chr10:22175399..22175423 (25 bp)
ACTCCTTCTGTTGATCGTTATGCTG
LOC_Os10g41820
Os.6799.1.S1_at--832--10131Chr10:22175381..22175405 (25 bp)
TATGCTGACGCGCACTTCAGGAGGA
LOC_Os10g41820
Os.6799.1.S1_at--40--3491Chr10:22175364..22175388 (25 bp)
CAGGAGGATTGCTTCCAATGTGTCC
LOC_Os10g41820
Os.6799.1.S1_at--54--5391Chr10:22175310..22175334 (25 bp)
GAAGAATACTATCCCCAAAGCTGTT
LOC_Os10g41820
Os.6799.1.S1_at--592--2351Chr10:22175294..22175318 (25 bp)
AAAGCTGTTGTTCATTGTCAAGTCA
LOC_Os10g41820
Os.6799.1.S1_at--831--4631Chr10:22175259..22175283 (25 bp)
GCGTTCCTTGCTTAACTATTTCTAT
LOC_Os10g41820
Os.6799.1.S1_at--679--1551Chr10:22175136..22175160 (25 bp)
AGCTTGCGCAACTCCTTGATGAGGA
LOC_Os10g41820
Os.6799.1.S1_at--1027--6291Chr10:22175119..22175143 (25 bp)
GATGAGGATCCTGCTCTTATGGAGC
LOC_Os10g41820
Os.6799.1.S1_at--475--8891Chr10:22175069..22175093 (25 bp)
TGAGTTATACAAGTCTGCCAGGGAT
LOC_Os10g41820
Os.6799.1.S1_at--628--6391Chr10:22175042..22175066 (25 bp)
GATCGATGCTGTGTCATGGTCACGT
LOC_Os10g41820
Os.6799.1.S1_at--316--6411Chr10:22174962..22174986 (25 bp)
GATCTGCACTTCTCGTGTCAAACAT
LOC_Os10g41820
Target Sequence 
ACTCCTTCTGTTGATCGTTATGCTGACGCGCACTTCAGGAGGATTGCTTCCAATGTGTCCTCATACATTGGCATGGTATC
TGATACATTGAAGAATACTATCCCCAAAGCTGTTGTTCATTGTCAAGTCAGGGAAGCTAAGCGTTCCTTGCTTAACTATT
TCTATACCCAAGTGGGCAGGAAAGATGCTAAGCAGCTTGCGCAACTCCTTGATGAGGATCCTGCTCTTATGGAGCGAAGG
CAGCAGTGCTTTAAGAGGCTTGAGTTATACAAGTCTGCCAGGGATGAGATCGATGCTGTGTCATGGTCACGTTAAAGGTA
ACATTCTGTTTGCTTTGCAATTTGACATGCAGAATTAATAGCCAGTTGATCTGCACTTCTCGTGTCAAACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6799.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis