Browse Element(s) Details


Os.8825.2.S1_x_at

Description gb:AK071623.1
DB_XREF= gi:32981646
TID=Os.8825.2
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.8825 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) putative amino acid or GABA permease (P0704D04.21), mRNA
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023104K01, full insert sequence.
FL= gb:AK071623.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4223411/11amino acid permease family protein, putative, expressed
LOC_Os01g717201/11Amino acid permease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g42170NANA1+24230316..24235220Zinc knuckle family protein
LOC_Os01g42190Os.35808.1.S1_at11/111+24238365..24240087DnaJ domain containing protein, expressed
LOC_Os01g42200Os.54424.1.S1_at11/111+24241013..24241704expressed protein
LOC_Os01g42210OsAffx.23631.1.S1_at9/111+24246206..24247977hypothetical protein
LOC_Os01g42220NANA1+24249192..24249710hypothetical protein
LOC_Os01g42234Os.8825.2.S1_x_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42234Os.8825.3.S1_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42234Os.8825.3.S1_x_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42234Os.8825.1.S1_a_at11/111+24250566..24260297amino acid permease family protein, putative, expressed
LOC_Os01g42250Os.56120.1.S1_at11/111+24260996..24264077ubiquitin, putative, expressed
LOC_Os01g42250Os.8825.4.S1_x_at9/111+24260996..24264077ubiquitin, putative, expressed
LOC_Os01g42250Os.8825.4.S1_at5/111+24260996..24264077ubiquitin, putative, expressed
LOC_Os01g42260Os.7109.1.S1_a_at11/111+24265217..24276734Single-stranded DNA binding protein, SSDP containing protein, expressed
LOC_Os01g42270OsAffx.11436.2.S1_at11/111+24279648..24289792Single-stranded DNA binding protein, SSDP containing protein
LOC_Os01g42270OsAffx.11436.1.S1_x_at10/111+24279648..24289792Single-stranded DNA binding protein, SSDP containing protein
LOC_Os01g42270OsAffx.21385.1.S1_at1/111+24279648..24289792Single-stranded DNA binding protein, SSDP containing protein

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Gene Ontology Classification
GO idTypeName
GO:0015359molecular_functionamino acid permease activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.8825.2.S1_x_at--945--551Chr01:24259703..24259727 (25 bp)
ATCCTGTTCAGGGTGACGCTGGCGC
LOC_Os01g42234
Os.8825.2.S1_x_at--944--1831Chr01:24259718..24259742 (25 bp)
ACGCTGGCGCGGAAGCACTTCGTGC
LOC_Os01g42234
Os.8825.2.S1_x_at--871--3971Chr01:24259791..24259815 (25 bp)
CGGTGCTGTGGGTGGCCACCATCAC
LOC_Os01g42234
Os.8825.2.S1_x_at--879--9092Chr01:24259818..24259842 (25 bp)
TGCTCTTCTCGCTGCCGGTGTCGTA
LOC_Os01g42234
Os.8825.2.S1_x_at--577--7451Chr01:24259835..24259859 (25 bp)
GTGTCGTACCCGGTCACCAAGGACA
LOC_Os01g42234
Os.8825.2.S1_x_at--559--931Chr01:24259931..24259955 (25 bp)
AGGCACTGGTTCAAAGGCCCCATCA
LOC_Os01g42234
Os.8825.2.S1_x_at--391--391Chr01:24259952..24259976 (25 bp)
ATCACCAACCTCGATGGCTAGCTAA
LOC_Os01g42234
Os.8825.2.S1_x_at--907--7851Chr01:24260000..24260024 (25 bp)
GGTTTTCGCCGGTGGATATGGAAAT
LOC_Os01g42234
Os.8825.2.S1_x_at--426--511Chr01:24260043..24260067 (25 bp)
ATCGTCGTCGATGATCGGAGGCGTT
LOC_Os01g42234
Os.8825.2.S1_x_at--1137--2371Chr01:24260123..24260147 (25 bp)
AAACGGGAGCATATCATGTCATGGT
LOC_Os01g42234
Os.8825.2.S1_x_at--771--6551Chr01:24260159..24260183 (25 bp)
GATTAGTTGTTGATTTGTTCAGCGA
LOC_Os01g42234
Target Sequence 
ATCCTGTTCAGGGTGACGCTGGCGCGGAAGCACTTCGTGCCGGGGCCCTTCAACCTGGGGCGGTGCGGCGTCGCCGTCGG
CTGGGCGGCGGTGCTGTGGGTGGCCACCATCACCGTGCTCTTCTCGCTGCCGGTGTCGTACCCGGTCACCAAGGACACCC
TCAACTACACCCCCGTCGCCGTCGGCGGCCTCTTCCTCCTCGTCCTCTCCTCCTGGCTCCTCAGCGCCAGGCACTGGTTC
AAAGGCCCCATCACCAACCTCGATGGCTAGCTAAGCCAAGATTGAGGCTTTGGTTTTGGTTTTCGCCGGTGGATATGGAA
ATGCAGTGGGAGATGGAAGAATCGTCGTCGATGATCGGAGGCGTTTCAGGTGGGAGGAGAAGTATAACTGAAGAACAGGT
AAGAAGATGATCTGGAAGGGAAACGGGAGCATATCATGTCATGGTGGTGGTGTTGTGATTAGTTGTTGATTTGTTCAGCG
A

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.8825.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis