Browse Element(s) Details


Os.9850.1.S1_s_at

Description gb:AU090547
DB_XREF= gi:7645983
DB_XREF=AU090547
CLONE=C0668
TID=Os.9850.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.9850 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0942011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g09384Os.45957.3.S1_x_at11/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.53325.1.S1_at9/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9859.3.S1_at6/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9859.5.S1_x_at4/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.45957.4.S1_x_at4/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9853.2.S1_x_at2/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.49445.1.S1_at2/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9859.3.S1_x_at2/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09384Os.9853.4.S1_x_at1/111+4765540..4779508ankyrin-like protein, putative, expressed
LOC_Os01g09400OsAffx.32051.1.S1_x_at1/111+4783280..4784044transposon protein, putative, unclassified
LOC_Os01g09410Os.9853.2.S1_x_at10/111+4788639..4791742expressed protein
LOC_Os01g09410Os.9859.4.S1_x_at2/111+4788639..4791742expressed protein
LOC_Os01g09420Os.9850.1.S1_s_at11/111+4792957..4795256expressed protein
LOC_Os01g09420Os.22772.1.S1_at5/111+4792957..4795256expressed protein
LOC_Os01g09430Os.1465.1.S1_at9/111+4797049..4798979SyrP, putative, expressed
LOC_Os01g09440OsAffx.24130.1.S1_x_at6/111+4804787..4805302hypothetical protein
LOC_Os01g09450Os.19952.1.S1_at11/111+4813647..4815762AUX/IAA family protein, expressed
LOC_Os01g09450OsAffx.26801.1.S1_x_at1/111+4813647..4815762AUX/IAA family protein, expressed
LOC_Os01g09460Os.33758.2.S1_s_at11/111+4816957..4819931Hexokinase 1, putative, expressed
LOC_Os01g09460Os.33758.2.S1_x_at11/111+4816957..4819931Hexokinase 1, putative, expressed
LOC_Os01g09460Os.33758.1.S1_s_at11/111+4816957..4819931Hexokinase 1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.9850.1.S1_s_at--1030--4831Chr01:4793132..4793156 (25 bp)
GCTAAATTATAGATGTTCGGAAAGA
LOC_Os01g09420
Os.9850.1.S1_s_at--1024--6711Chr01:4793118..4793142 (25 bp)
GTTCGGAAAGAAATTTGGCAGACTA
LOC_Os01g09420
Os.9850.1.S1_s_at--949--10611Chr01:4793117..4793141 (25 bp)
TTCGGAAAGAAATTTGGCAGACTAT
LOC_Os01g09420
Os.9850.1.S1_s_at--940--9411Chr01:4793116..4793140 (25 bp)
TCGGAAAGAAATTTGGCAGACTATG
LOC_Os01g09420
Os.9850.1.S1_s_at--32--8151Chr01:4793114..4793138 (25 bp)
GGAAAGAAATTTGGCAGACTATGAC
LOC_Os01g09420
Os.9850.1.S1_s_at--370--2291Chr01:4793112..4793136 (25 bp)
AAAGAAATTTGGCAGACTATGACAC
LOC_Os01g09420
Os.9850.1.S1_s_at--707--2751Chr01:4793111..4793135 (25 bp)
AAGAAATTTGGCAGACTATGACACC
LOC_Os01g09420
Os.9850.1.S1_s_at--840--1411Chr01:4793110..4793134 (25 bp)
AGAAATTTGGCAGACTATGACACCT
LOC_Os01g09420
Os.9850.1.S1_s_at--768--5591Chr01:4793109..4793133 (25 bp)
GAAATTTGGCAGACTATGACACCTC
LOC_Os01g09420
Os.9850.1.S1_s_at--643--2251Chr01:4793108..4793132 (25 bp)
AAATTTGGCAGACTATGACACCTCG
LOC_Os01g09420
Os.9850.1.S1_s_at--461--3111Chr01:4793107..4793131 (25 bp)
AATTTGGCAGACTATGACACCTCGT
LOC_Os01g09420
Target Sequence 
GCTAAATTATAGATGTTCGGAAAGAAATTTGGCAGACTATGACACCTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.9850.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis