Browse Element(s) Details


OsAffx.10855.1.S1_at

Description gb:AK062324.1
DB_XREF= gi:32972342
TID=OsAffx.10855.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-101-D02, full insert sequence.
FL= gb:AK062324.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g044702/11hypothetical protein
LOC_Os07g314502/11SNF2 family N-terminal domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g04409OsAffx.23111.2.S1_at11/111+1954649..1964253protein kinase family protein, putative, expressed
LOC_Os01g04409OsAffx.23111.1.S1_s_at11/111+1954649..1964253protein kinase family protein, putative, expressed
LOC_Os01g04409Os.14959.1.S1_at11/111+1954649..1964253protein kinase family protein, putative, expressed
LOC_Os01g04430OsAffx.10906.3.A1_at11/111+1965125..1967340hypothetical protein
LOC_Os01g04430OsAffx.10906.3.A1_x_at11/111+1965125..1967340hypothetical protein
LOC_Os01g04440OsAffx.23109.1.S1_at10/111+1970501..1973993hypothetical protein
LOC_Os01g04440OsAffx.10096.1.S1_x_at1/111+1970501..1973993hypothetical protein
LOC_Os01g04450Os.53345.1.S1_at11/111+1974225..1979286Protein kinase domain containing protein, expressed
LOC_Os01g04460OsAffx.1929.1.S1_at11/111+1981069..1983196Protein kinase domain containing protein
LOC_Os01g04470OsAffx.23110.1.S1_at11/111+1985533..1988050hypothetical protein
LOC_Os01g04470OsAffx.10855.1.S1_at2/111+1985533..1988050hypothetical protein
LOC_Os01g04480OsAffx.10907.1.S1_at11/111+1990355..1993659Protein kinase domain containing protein, expressed
LOC_Os01g04490NANA1+1995229..1999941Protein kinase domain containing protein, expressed
LOC_Os01g04500Os.53461.1.S1_at10/111+2000185..2000686hypothetical protein
LOC_Os01g04510Os.6227.2.S1_x_at1/111+2002954..2004056hypothetical protein
LOC_Os01g04520Os.53382.1.S1_at6/111+2011623..2014859Protein kinase domain containing protein
LOC_Os01g04520OsAffx.10881.2.S1_x_at1/111+2011623..2014859Protein kinase domain containing protein

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Gene Ontology Classification
GO idTypeName
GO:0006333biological_processchromatin assembly or disassembly
GO:0008283biological_processcell proliferation
GO:0009739biological_processresponse to gibberellic acid stimulus
GO:0016481biological_processnegative regulation of transcription
GO:0016568biological_processchromatin modification
GO:0048364biological_processroot development
GO:0003677molecular_functionDNA binding
GO:0003678molecular_functionDNA helicase activity
GO:0003682molecular_functionchromatin binding
GO:0004386molecular_functionhelicase activity
GO:0005524molecular_functionATP binding
GO:0008094molecular_functionDNA-dependent ATPase activity
GO:0016887molecular_functionATPase activity
GO:0030528molecular_functiontranscription regulator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.10855.1.S1_at--878--9834Chr12:20670979..20671003 (25 bp)
TAAACGCTGGTTCTATCCCGGCCAA
NONE
OsAffx.10855.1.S1_at--363--10134Chr12:20670966..20670990 (25 bp)
TATCCCGGCCAAGCAAGCAAGGTGA
NONE
OsAffx.10855.1.S1_at--904--5193Chr12:20670897..20670921 (25 bp)
GAATTGGTCAACTCATCAGGCTCAT
NONE
OsAffx.10855.1.S1_at--213--2773Chr12:20670866..20670890 (25 bp)
AAGACTGCAGGTTCGAATCCTGTCC
NONE
OsAffx.10855.1.S1_at--690--3333Chr12:20670832..20670856 (25 bp)
CACGTCAGATACTTCTACGAGTCCT
NONE
OsAffx.10855.1.S1_at--309--6753Chr12:20670783..20670807 (25 bp)
GTTCAAGTCGCCTGCCTAACAAATA
NONE
OsAffx.10855.1.S1_at--342--2035Chr01:1987338..1987362 (25 bp)
ACTACGTGTTCTAGTTGCTCTGTTC
LOC_Os01g04470
OsAffx.10855.1.S1_at--313--9254Chr07:17638123..17638147 (25 bp)
TCCGTTGGTCCCCATGGAAAGTGTT
NONE
OsAffx.10855.1.S1_at--116--4835Chr01:1987773..1987797 (25 bp)
GCTCATGTTCACGTTCTCAAAATCA
LOC_Os01g04470
OsAffx.10855.1.S1_at--1040--6714Chr12:20670655..20670679 (25 bp)
GTTCTCAAAATCAGGCTTTCGTTGG
NONE
OsAffx.10855.1.S1_at--801--9533Chr12:20670499..20670523 (25 bp)
TCTACCCACTCGTAGCTTGACAATT
NONE
Target Sequence 
TAAACGCTGGTTCTATCCCGGCCAAGCAAGCAAGGTGAACCCCGGTGGGAAAGAAAGACCAGGGGGAAGAAGCGGGGTAG
AGGAATTGGTCAACTCATCAGGCTCATGACCTGAAGACTGCAGGTTCGAATCCTGTCCCCGCCTAATCACGTCAGATACT
TCTACGAGTCCTGATCACCTGGGTGAAAGAATCTATGTTCAAGTCGCCTGCCTAACAAATAGACAACTACGTGTTCTAGT
TGCTCTGTTCCGTTGGTCCCCATGGAAAGTGTTGTTGTGTCAAATCGAGATTGTGTGGGTGTTCAGTCTACCGCTCATGT
TCACGTTCTCAAAATCAGGCTTTCGTTGGAAAAACCAACGCCGACCCCAAACAAGTCTCTCCAATATAAGGAGAGCGGAG
CTTAAAAGGATATAGTTACCTATGATGAGATTTAGTTCAATGGATATGAAGGATAGAAGAAATAAAGTATTTTCTACTAC
TCTACCCACTCGTAGCTTGACAATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.10855.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis