Browse Element(s) Details


OsAffx.11483.1.S1_at

Description tigr:9629.m04393
TID=OsAffx.11483.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4592011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g45880Os.14861.2.S1_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.14861.1.S1_s_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.33218.1.S1_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.14861.2.S1_x_at11/111+26387737..26395556expressed protein
LOC_Os01g45880Os.51229.1.S1_at3/111+26387737..26395556expressed protein
LOC_Os01g45880Os.7388.2.S1_x_at1/111+26387737..26395556expressed protein
LOC_Os01g45890OsAffx.11482.1.S1_at11/111+26398357..26399595expressed protein
LOC_Os01g45890Os.33218.2.A1_x_at3/111+26398357..26399595expressed protein
LOC_Os01g45890OsAffx.26507.1.S1_x_at1/111+26398357..26399595expressed protein
LOC_Os01g45900Os.33110.1.S1_at11/111+26401878..26403982F-box domain containing protein, expressed
LOC_Os01g45910Os.12625.5.S1_at11/111+26404891..26409046Plastidic ATP/ADP-transporter, putative, expressed
LOC_Os01g45920OsAffx.11483.1.S1_at11/111+26416385..26416963hypothetical protein
LOC_Os01g45930NANA1+26419742..26420167hypothetical protein
LOC_Os01g45940OsAffx.2245.1.S1_at10/111+26422086..26422434hypothetical protein
LOC_Os01g45960Os.21836.1.S1_at11/111+26433684..26438061hydrolase, alpha/beta fold family protein, expressed
LOC_Os01g45970Os.8626.1.S1_a_at11/111+26438803..26440973expressed protein
LOC_Os01g45970Os.8626.2.S1_at11/111+26438803..26440973expressed protein
LOC_Os01g45970Os.8626.3.S1_s_at7/111+26438803..26440973expressed protein
LOC_Os01g45970Os.8626.1.S1_x_at6/111+26438803..26440973expressed protein
LOC_Os01g45970Os.8626.3.S1_x_at4/111+26438803..26440973expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11483.1.S1_at--475--1771Chr01:26416901..26416925 (25 bp)
ACCTGTACCCTCTACAACGTGTGAG
LOC_Os01g45920
OsAffx.11483.1.S1_at--937--4151Chr01:26416894..26416918 (25 bp)
CCCTCTACAACGTGTGAGGAGCCCA
LOC_Os01g45920
OsAffx.11483.1.S1_at--69--7271Chr01:26416585..26416609 (25 bp)
GTCCAAGCCACTGATACTAGTGCCA
LOC_Os01g45920
OsAffx.11483.1.S1_at--1095--1951Chr01:26416576..26416600 (25 bp)
ACTGATACTAGTGCCAACCTCGTTC
LOC_Os01g45920
OsAffx.11483.1.S1_at--433--331Chr01:26416572..26416596 (25 bp)
ATACTAGTGCCAACCTCGTTCTTGT
LOC_Os01g45920
OsAffx.11483.1.S1_at--405--7271Chr01:26416566..26416590 (25 bp)
GTGCCAACCTCGTTCTTGTCGTCAG
LOC_Os01g45920
OsAffx.11483.1.S1_at--690--10551Chr01:26416554..26416578 (25 bp)
TTCTTGTCGTCAGCCGCCGCTGTAG
LOC_Os01g45920
OsAffx.11483.1.S1_at--1077--9251Chr01:26416510..26416534 (25 bp)
TCCTCTGCCACCACTCATGGAGAAG
LOC_Os01g45920
OsAffx.11483.1.S1_at--690--3371Chr01:26416502..26416526 (25 bp)
CACCACTCATGGAGAAGAGGATGGC
LOC_Os01g45920
OsAffx.11483.1.S1_at--965--8391Chr01:26416468..26416492 (25 bp)
GGCGCCACCAATGGAGAAAAGAACA
LOC_Os01g45920
OsAffx.11483.1.S1_at--387--1431Chr01:26416451..26416475 (25 bp)
AAAGAACAAAGGTGGCAAGGCAACA
LOC_Os01g45920
Target Sequence 
ACCTGTACCCTCTACAACGTGTGAGGAGCCCANNNNNANNNCNANCNNNGNNNANGNNGNNTTGNNNNTCNNNNNNGTCC
AAGCCACTGATACTAGTGCCAACCTCGTTCTTGTCGTCAGCCGCCGCTGTAGCTCCCTCCCCACCTCCCTCTCCTCTGCC
ACCACTCATGGAGAAGAGGATGGCAGTGGCAATGGCGCCACCAATGGAGAAAAGAACAAAGGTGGCAAGGCAACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11483.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis