Browse Element(s) Details


OsAffx.11584.1.S1_at

Description tigr:9629.m05182
TID=OsAffx.11584.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ribosomal protein L20
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g5328011/1150S ribosomal protein L20, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g53220Os.35681.1.S1_at11/111+30909333..30910542HSF-type DNA-binding domain containing protein, expressed
LOC_Os01g53230OsAffx.23771.1.S1_at1/111+30911948..30912271hypothetical protein
LOC_Os01g53240Os.8061.1.S1_at11/111+30916707..30919383RD22, putative, expressed
LOC_Os01g53250Os.17257.1.S1_x_at11/111+30920349..30925365FAD binding domain containing protein, expressed
LOC_Os01g53260Os.30386.1.S1_at11/111+30931143..30934925WRKY transcription factor 45, putative, expressed
LOC_Os01g53280OsAffx.11584.1.S1_at11/111+30935211..3093730550S ribosomal protein L20, putative, expressed
LOC_Os01g53280Os.36029.1.S1_at11/111+30935211..3093730550S ribosomal protein L20, putative, expressed
LOC_Os01g53294Os.3427.1.S1_at11/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.2323.1.S1_at11/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.2.S1_at10/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.2.S1_x_at9/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.1.S1_at6/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.1.S1_x_at6/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.5.S1_at3/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.3.S1_at3/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.5.S1_x_at2/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294OsAffx.28610.4.S1_x_at1/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53294Os.4760.1.S1_at1/111+30949519..30961252NADPH oxidase, putative, expressed
LOC_Os01g53310OsAffx.23773.1.S1_at8/111+30961491..30963995hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006412biological_processprotein biosynthesis
GO:0007046biological_processribosome biogenesis
GO:0000311cellular_componentplastid large ribosomal subunit
GO:0005840cellular_componentribosome
GO:0003735molecular_functionstructural constituent of ribosome
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.11584.1.S1_at--501--7691Chr01:30936636..30936660 (25 bp)
GGGTATGTATCCATTGCACTCAAGC
LOC_Os01g53280
OsAffx.11584.1.S1_at--864--9011Chr01:30936650..30936674 (25 bp)
TGCACTCAAGCTGTCAAAAAGGAAA
LOC_Os01g53280
OsAffx.11584.1.S1_at--307--5591Chr01:30936671..30936695 (25 bp)
GAAATATCATTGGTAGTTGCTAGGA
LOC_Os01g53280
OsAffx.11584.1.S1_at--460--2811Chr01:30936696..30936720 (25 bp)
AAGATCTAATCATACGCCGTTCCAT
LOC_Os01g53280
OsAffx.11584.1.S1_at--720--311Chr01:30936707..30936731 (25 bp)
ATACGCCGTTCCATCCTGTGCTTGA
LOC_Os01g53280
OsAffx.11584.1.S1_at--150--571Chr01:30936719..30936743 (25 bp)
ATCCTGTGCTTGAGCCTTTCAAAAC
LOC_Os01g53280
OsAffx.11584.1.S1_at--1063--5831Chr01:30936730..30936754 (25 bp)
GAGCCTTTCAAAACAAACAATTCAA
LOC_Os01g53280
OsAffx.11584.1.S1_at--197--2191Chr01:30936759..30936783 (25 bp)
ACACTACTAGACTTACATCTTGGAG
LOC_Os01g53280
OsAffx.11584.1.S1_at--328--6071Chr01:30936781..30936805 (25 bp)
GAGTTTAAGTAGCTCTTTTCTTGCA
LOC_Os01g53280
OsAffx.11584.1.S1_at--132--1591Chr01:30936791..30936815 (25 bp)
AGCTCTTTTCTTGCATTTGACTACC
LOC_Os01g53280
OsAffx.11584.1.S1_at--1038--3611Chr01:30936800..30936824 (25 bp)
CTTGCATTTGACTACCAGGTGAACT
LOC_Os01g53280
Target Sequence 
GGGTATGTATCCATTGCACTCAAGCTGTCAAAAAGGAAATATCATTGGTAGTTGCTAGGAAAGATCTAATCATACGCCGT
TCCATCCTGTGCTTGAGCCTTTCAAAACAAACAATTCAAGATAACACTACTAGACTTACATCTTGGAGTTTAAGTAGCTC
TTTTCTTGCATTTGACTACCAGGTGAACT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.11584.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis