Browse Element(s) Details


OsAffx.12400.1.S1_at

Description tigr:9630.m03738
TID=OsAffx.12400.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g3899011/11hypothetical protein
LOC_Os03g135791/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g38920Os.22781.1.S1_at11/112+23521270..23524665Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3, putative, expressed
LOC_Os02g38920Os.57475.1.S1_x_at8/112+23521270..23524665Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3, putative, expressed
LOC_Os02g38930OsAffx.24640.2.S1_at11/112+23525523..23527408Cytochrome P450 family protein, expressed
LOC_Os02g38940OsAffx.24640.1.S1_at11/112+23529290..23531056Cytochrome P450 family protein, expressed
LOC_Os02g38950OsAffx.12401.1.S1_at11/112+23532729..23534382pentatricopeptide, putative, expressed
LOC_Os02g38960OsAffx.2911.1.S1_at11/112+23535136..23535920hypothetical protein
LOC_Os02g38970Os.47926.1.S1_at11/112+23538936..23543212expressed protein
LOC_Os02g38980Os.10595.1.S1_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38980Os.10595.3.S1_x_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38980Os.48062.1.S1_s_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38980Os.10595.2.S1_at11/112+23543306..23548511global transcription factor group E, putative, expressed
LOC_Os02g38990OsAffx.12400.1.S1_at11/112+23549276..23550159hypothetical protein
LOC_Os02g39000Os.49663.1.S1_at11/112+23554021..23555796Remorin, C-terminal region family protein, expressed
LOC_Os02g39010Os.11803.1.A1_at11/112+23556410..23563107PITSLRE serine/threonine-protein kinase CDC2L2, putative, expressed
LOC_Os02g39010Os.11889.1.S1_at11/112+23556410..23563107PITSLRE serine/threonine-protein kinase CDC2L2, putative, expressed
LOC_Os02g39010Os.11889.1.S2_at11/112+23556410..23563107PITSLRE serine/threonine-protein kinase CDC2L2, putative, expressed
LOC_Os02g39020OsAffx.24642.1.S1_at11/112+23564318..23566420hAT family dimerisation domain containing protein
LOC_Os02g39030OsAffx.24641.1.S1_at11/112+23567096..23569639expressed protein
LOC_Os02g39030Os.21789.2.S1_x_at10/112+23567096..23569639expressed protein
LOC_Os02g39040Os.35065.1.S1_at11/112+23570045..23572405mitochondrial transcription termination factor, putative, expressed
LOC_Os02g39050Os.51940.1.S1_x_at11/112+23572529..23574954Isy1-like splicing family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12400.1.S1_at--735--7891Chr02:23549669..23549944 (25 bp)
GGTTGGAGGAGCTGAACCCTCTCGA
LOC_Os02g38990
OsAffx.12400.1.S1_at--335--1592Chr03:7325097..7325152 (25 bp)
AGCTGAACCCTCTCGACGCGGCGGA
LOC_Os03g13579
OsAffx.12400.1.S1_at--509--8351Chr02:23549641..23549665 (25 bp)
GGCGGAGAAGCGAACCCATCTGTTG
LOC_Os02g38990
OsAffx.12400.1.S1_at--418--5391Chr02:23549635..23549659 (25 bp)
GAAGCGAACCCATCTGTTGACGTGG
LOC_Os02g38990
OsAffx.12400.1.S1_at--764--3531Chr02:23549625..23549649 (25 bp)
CATCTGTTGACGTGGGTGCCCCGGC
LOC_Os02g38990
OsAffx.12400.1.S1_at--643--8391Chr02:23549599..23549623 (25 bp)
GGCGCGACGTTCTTGACGCAGACGT
LOC_Os02g38990
OsAffx.12400.1.S1_at--684--5991Chr02:23549501..23549525 (25 bp)
GAGACGTCCAGTCGCCGAGCAAATG
LOC_Os02g38990
OsAffx.12400.1.S1_at--325--1151Chr02:23549492..23549516 (25 bp)
AGTCGCCGAGCAAATGGCCGTGTCC
LOC_Os02g38990
OsAffx.12400.1.S1_at--1058--4511Chr02:23549357..23549381 (25 bp)
GCCGCGACGGCGCTATCGTTGCCAA
LOC_Os02g38990
OsAffx.12400.1.S1_at--657--3911Chr02:23549350..23549374 (25 bp)
CGGCGCTATCGTTGCCAATCCGCAT
LOC_Os02g38990
OsAffx.12400.1.S1_at--994--4151Chr02:23549324..23549348 (25 bp)
CGCCTCGGTTGCTGTTAGACAGCGT
LOC_Os02g38990
Target Sequence 
GGTTGGAGGAGCTGAACCCTCTCGACGCGGCGGAGAAGCGAACCCATCTGTTGACGTGGGTGCCCCGGCTGGCGCGACGT
TCTTGACGCAGACGTGCGCCGTGGACGTGGTGTACACGCACGCACGCTTGGGGGAAAATAGAGGCGAGGGCGATGCCACC
GCCGCCGCGAGACGTCCAGTCGCCGAGCAAATGGCCGTGTCCGCGAGGTGGCTGTCGCGGAGGTCGAGGCCGACCATGCG
GAGCGGGAGAAAGAAGCGCCACCCGCGGCGGTGTCAGCGAGGTGGCCACCGTACCCCGCGCCGTGAGGTGTGGCCGCGAC
GGCGCTATCGTTGCCAATCCGCATCCGCCTCGGTTGCTGTTAGACAGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12400.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis