Browse Element(s) Details


OsAffx.12627.1.S1_at

Description tigr:9630.m05307
TID=OsAffx.12627.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g5366011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g53620OsAffx.12626.1.S1_at7/112+32788582..32794998CCAAT-binding transcription factor subunit B family protein, expressed
LOC_Os02g53630Os.31312.2.S1_x_at4/112+32798674..32801858retrotransposon protein, putative, unclassified
LOC_Os02g53630Os.31312.5.S1_x_at3/112+32798674..32801858retrotransposon protein, putative, unclassified
LOC_Os02g53640OsAffx.9045.1.S1_at3/112+32802497..32804327retrotransposon protein, putative, unclassified
LOC_Os02g53640OsAffx.9045.1.S1_x_at3/112+32802497..32804327retrotransposon protein, putative, unclassified
LOC_Os02g53650OsAffx.22848.4.S1_at2/112+32806312..32812223retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g53650OsAffx.22848.4.S1_x_at1/112+32806312..32812223retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g53650OsAffx.22848.3.S1_x_at1/112+32806312..32812223retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os02g53660OsAffx.12627.1.S1_at11/112+32816969..32817880expressed protein
LOC_Os02g53670Os.14008.1.S1_at11/112+32821977..32826900Myb-like DNA-binding domain containing protein, expressed
LOC_Os02g53680Os.1811.1.S1_at11/112+32826963..32830612replication factor-a protein 1 containing protein, expressed
LOC_Os02g53690Os.2347.1.S1_a_at11/112+32834495..32836587expressed protein
LOC_Os02g53690OsAffx.27547.1.S1_x_at1/112+32834495..32836587expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.12627.1.S1_at--25--1171Chr02:32817540..32817564 (25 bp)
AGTCAACAGGAGACGTCGCGGAGAA
LOC_Os02g53660
OsAffx.12627.1.S1_at--971--3211Chr02:32817482..32817506 (25 bp)
CAAGTCGGCGCCATTCGCGTGCCTT
LOC_Os02g53660
OsAffx.12627.1.S1_at--341--91Chr02:32817470..32817494 (25 bp)
ATTCGCGTGCCTTCTGAATGCTCTG
LOC_Os02g53660
OsAffx.12627.1.S1_at--402--4451Chr02:32817462..32817486 (25 bp)
GCCTTCTGAATGCTCTGCTTTGCAA
LOC_Os02g53660
OsAffx.12627.1.S1_at--454--5271Chr02:32817455..32817479 (25 bp)
GAATGCTCTGCTTTGCAACAGGAGG
LOC_Os02g53660
OsAffx.12627.1.S1_at--171--10271Chr02:32817444..32817468 (25 bp)
TTTGCAACAGGAGGTCAGCCAGGTC
LOC_Os02g53660
OsAffx.12627.1.S1_at--101--3271Chr02:32817440..32817464 (25 bp)
CAACAGGAGGTCAGCCAGGTCGGCC
LOC_Os02g53660
OsAffx.12627.1.S1_at--689--4651Chr02:32817349..32817373 (25 bp)
GCGTCCGCGAGGTCGATCCTGTCGT
LOC_Os02g53660
OsAffx.12627.1.S1_at--775--1031Chr02:32817340..32817364 (25 bp)
AGGTCGATCCTGTCGTCGCGCGCTT
LOC_Os02g53660
OsAffx.12627.1.S1_at--447--4671Chr02:32817269..32817293 (25 bp)
GCGGGCAGTGCGGTTCTCGCCGGTG
LOC_Os02g53660
OsAffx.12627.1.S1_at--991--8791Chr02:32817048..32817072 (25 bp)
TGTTCGAGCTCGAGAGCTTGCCGGC
LOC_Os02g53660
Target Sequence 
AGTCAACAGGAGACGTCGCGGAGAAGAAGAGGGGCAGAAGGAAGAACAAGAATGGTGCCAAGTCGGCGCCATTCGCGTGC
CTTCTGAATGCTCTGCTTTGCAACAGGAGGTCAGCCAGGTCGGCCGAGCCGACGACGCCGCGGGCTCTGGCGGTGGCGCC
GGCGGCAGTGGCAGTCACCGCCGCTGAGCCGGCGTCCGCGAGGTCGATCCTGTCGTCGCGCGCTTCCCGGCGACAGCCCG
CGGCGACGGGTGGGATCCTGACTCCGGCGAGGCGGGCAGTGCGGTTCTCGCCGGTGGCGGTCGTGGTGGACGACGGCGAG
CACGGGTGCCGGGACGCCGGGGTGGCGAGGCTGCGCGGCGCGGAGAGGGAGGTGGCCGCGGCGCAGGAGTCGGCGGCGGA
GGCGGAGAGGAGGGTGGAAGAGCTGCTGCGCGCGCTCGGCGTGGCGGAGGAGAGCGAGAGGGCCAAGGAGAGCAGCGAGT
CCAGCTCCGACCTGTTCGAGCTCGAGAGCTTGCCGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.12627.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis