Browse Element(s) Details


OsAffx.14231.1.S1_x_at

Description tigr:9632.m03944
TID=OsAffx.14231.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=POT family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4140011/11Major Facilitator Superfamily protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g41330Os.17244.1.S1_at11/114+24306090..24308564expressed protein
LOC_Os04g41340Os.12371.1.S1_at11/114+24308802..24311410phosphoglycolate/pyridoxal phosphate phosphatase family protein, expressed
LOC_Os04g41340OsAffx.7670.1.S1_at1/114+24308802..24311410phosphoglycolate/pyridoxal phosphate phosphatase family protein, expressed
LOC_Os04g41350OsAffx.14230.1.S1_x_at11/114+24315366..24317159Transmembrane amino acid transporter protein, expressed
LOC_Os04g41350OsAffx.14230.1.S1_at11/114+24315366..24317159Transmembrane amino acid transporter protein, expressed
LOC_Os04g41360OsAffx.26414.1.S1_at10/114+24317407..24318169hypothetical protein
LOC_Os04g41370OsAffx.4049.1.S1_at11/114+24319367..24322495Leucine Rich Repeat family protein
LOC_Os04g41380Os.52747.1.S1_at10/114+24322860..24326268Leucine Rich Repeat family protein, expressed
LOC_Os04g41390OsAffx.4050.1.S1_at11/114+24326702..24327166hypothetical protein
LOC_Os04g41400OsAffx.14231.1.S1_at11/114+24327703..24330018Major Facilitator Superfamily protein, expressed
LOC_Os04g41400OsAffx.14231.1.S1_x_at11/114+24327703..24330018Major Facilitator Superfamily protein, expressed
LOC_Os04g41410Os.27008.1.A1_at9/114+24331451..24334305POT family protein, expressed
LOC_Os04g41430Os.15633.1.S2_at1/114+24338158..24339519retrotransposon protein, putative, LINE subclass
LOC_Os04g41439NANA4+24340639..24340878NA
LOC_Os04g41450Os.52574.1.S1_at11/114+24341892..24347360POT family protein, expressed
LOC_Os04g41450Os.52574.2.S1_x_at10/114+24341892..24347360POT family protein, expressed
LOC_Os04g41450Os.52574.2.S1_at9/114+24341892..24347360POT family protein, expressed
LOC_Os04g41460Os.10117.1.S1_at11/114+24348024..24352489Sugar transporter family protein, expressed
LOC_Os04g41460Os.23978.1.A1_at10/114+24348024..24352489Sugar transporter family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0006857biological_processoligopeptide transport
GO:0016020cellular_componentmembrane
GO:0005215molecular_functiontransporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14231.1.S1_x_at--911--1311Chr04:24328268..24328292 (25 bp)
AGATGGCGCTGCTCCCGGTGTACGA
LOC_Os04g41400
OsAffx.14231.1.S1_x_at--386--1311Chr04:24328085..24328109 (25 bp)
AGATGTCGCTGTTCTGGCTGGCGCC
LOC_Os04g41400
OsAffx.14231.1.S1_x_at--1110--4731Chr04:24328078..24328102 (25 bp)
GCTGTTCTGGCTGGCGCCACAGTTC
LOC_Os04g41400
OsAffx.14231.1.S1_x_at--111--3791Chr04:24328011..24328035 (25 bp)
CTCGAGCTCTTCAGCAGCGAGGCGC
LOC_Os04g41400
OsAffx.14231.1.S1_x_at--695--6211Chr04:24327993..24328017 (25 bp)
GAGGCGCCCCGTGGCATGAAGTCCA
LOC_Os04g41400
OsAffx.14231.1.S1_x_at--606--4991Chr04:24327980..24328004 (25 bp)
GCATGAAGTCCATCGCGTCGGCGCT
LOC_Os04g41400
OsAffx.14231.1.S1_x_at--1079--8791Chr04:24327956..24327980 (25 bp)
TGTTCTGGTGCGAGCTCGGCCTCTC
LOC_Os04g41400
OsAffx.14231.1.S1_x_at--862--9051Chr04:24327785..24327809 (25 bp)
TGCTTGGCTTCGTCAACTACCTCTA
LOC_Os04g41400
OsAffx.14231.1.S1_x_at--439--2031Chr04:24327770..24327794 (25 bp)
ACTACCTCTACTGGGCGAGCAGGTA
LOC_Os04g41400
OsAffx.14231.1.S1_x_at--1048--8371Chr04:24327757..24327781 (25 bp)
GGCGAGCAGGTACATATACCGGCAA
LOC_Os04g41400
OsAffx.14231.1.S1_x_at--1062--2071Chr04:24327746..24327770 (25 bp)
ACATATACCGGCAAGACCCACGCGT
LOC_Os04g41400
Target Sequence 
AGATGGCGCTGCTCCCGGTGTACGACCGCTTCCTCGTGCCGCTCCTGCGGCGGCGCACGGGCTACGCCAGCGGCGTCACC
CACCTGCAGCGCGTCGGCGCCGGGTTCGCCGCCGTGATCCTGGCGTCGGCCATCGCCGCCGTCGTGGAGAGGAAGCGGCG
GGCCGACGCCGCGGCGGCGGGGCAGATGTCGCTGTTCTGGCTGGCGCCACAGTTCTTCCTGCTCGGCGTCTCCGACGTGA
CGTCGTTCCCGGGCCTCCTCGAGCTCTTCAGCAGCGAGGCGCCCCGTGGCATGAAGTCCATCGCGTCGGCGCTGTTCTGG
TGCGAGCTCGGCCTCTCGTCGTGGCTCGCCACGCTGCTGGTGCAGGTGGTGAACAGGGCCACGAGGCGGCACGGCGGCGG
CGGCGGCGGCGGGTGGCTCGAGGGCGCCACCCTCAACACCAGCCGCCTCGACCTCTTCTACTGGGTCGTCGCCGCCGTCG
GGCTGCTTGGCTTCGTCAACTACCTCTACTGGGCGAGCAGGTACATATACCGGCAAGACCCACGCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14231.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis