Browse Element(s) Details


OsAffx.15574.1.S1_at

Description tigr:9634.m02295
TID=OsAffx.15574.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2330011/11hypothetical protein
LOC_Os10g240601/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g23274Os.49736.1.S1_a_at11/116+13583736..13590993Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g23274Os.49736.1.S2_at11/116+13583736..13590993Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g23274Os.49736.2.S1_x_at11/116+13583736..13590993Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g23274Os.49736.1.S1_at9/116+13583736..13590993Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g23274Os.49736.1.S1_x_at9/116+13583736..13590993Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g23290Os.5527.1.S1_a_at11/116+13600952..13603918phosphatidylinositol 3- and 4-kinase family protein, putative, expressed
LOC_Os06g23300OsAffx.15574.1.S1_at11/116+13609068..13609642hypothetical protein
LOC_Os06g23310OsAffx.15575.1.S1_at11/116+13615320..13615867hypothetical protein
LOC_Os06g23320OsAffx.20497.1.S1_at2/116+13617970..13621420transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23320OsAffx.31287.1.S1_at1/116+13617970..13621420transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23320OsAffx.3348.1.S1_at1/116+13617970..13621420transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23320OsAffx.22387.1.S1_at1/116+13617970..13621420transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23330NANA6+13621967..13622431hypothetical protein
LOC_Os06g23340OsAffx.18924.2.S1_x_at7/116+13624304..13627908transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23340OsAffx.19421.2.S1_at2/116+13624304..13627908transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23340OsAffx.19421.1.S1_at1/116+13624304..13627908transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23340OsAffx.18924.1.S1_at1/116+13624304..13627908transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os06g23350Os.55197.1.S1_at11/116+13629102..13630409Seed maturation protein, expressed
LOC_Os06g23360Os.54783.1.S1_at11/116+13630843..13631939expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.15574.1.S1_at--786--3191Chr06:13609165..13609189 (25 bp)
CAATGCGGATGCCACGACGAGGTAG
LOC_Os06g23300
OsAffx.15574.1.S1_at--365--1011Chr06:13609184..13609208 (25 bp)
AGGTAGGGTTGGTACGGCTGCTGCC
LOC_Os06g23300
OsAffx.15574.1.S1_at--200--7451Chr06:13609225..13609249 (25 bp)
GTGTCATCGTCCTTGCTATTGGCTA
LOC_Os06g23300
OsAffx.15574.1.S1_at--423--10732Chr10:11993769..11993872 (25 bp)
TTGCTATTGGCTACCACCGCTACCG
LOC_Os10g24060
OsAffx.15574.1.S1_at--20--9171Chr06:13609263..13609287 (25 bp)
TGCCGCTGCCATTGGGAAACGAGAG
LOC_Os06g23300
OsAffx.15574.1.S1_at--976--5971Chr06:13609285..13609381 (25 bp)
GAGACAAGGGTTTAGGTGCTGCCCT
LOC_Os06g23300
OsAffx.15574.1.S1_at--1014--10071Chr06:13609372..13609393 (22 bp)
TAGGTGCTGCCCTTGTCGCGATGGC
LOC_Os06g23300
OsAffx.15574.1.S1_at--288--8491Chr06:13609390..13609414 (25 bp)
TGGCTGCGCGCCCATTGGACTCGAC
LOC_Os06g23300
OsAffx.15574.1.S1_at--886--4511Chr06:13609536..13609560 (25 bp)
GCCGCAGCGGCGATGGAGACATGAT
LOC_Os06g23300
OsAffx.15574.1.S1_at--433--2111Chr06:13609554..13609578 (25 bp)
ACATGATGATGGTCGTCGGTGTCAG
LOC_Os06g23300
OsAffx.15574.1.S1_at--85--811Chr06:13609562..13609586 (25 bp)
ATGGTCGTCGGTGTCAGTGAGCAAA
LOC_Os06g23300
Target Sequence 
CAATGCGGATGCCACGACGAGGTAGGGTTGGTACGGCTGCTGCCGGCGACGGCGGCCGGGGTGTCATCGTCCTTGCTATT
GGCTACCACCGCTACCGCTGCCGCTGCCATTGGGAAACGAGAGACAAGGGTTTAGGTGCTGCCCTTGTCGCGATGGCTGC
GCGCCCATTGGACTCGACCCCGCCGGCTGAGGAGAAGCCACACTGGCGCCGCAGCGGCGATGGAGACATGATGATGGTCG
TCGGTGTCAGTGAGCAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.15574.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis