Browse Element(s) Details


OsAffx.16685.1.S1_at

Description tigr:9635.m04254
TID=OsAffx.16685.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g4247011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g42420Os.37967.1.S1_at11/117+25391329..253969053-oxoacyl-synthase I, chloroplast precursor, putative, expressed
LOC_Os07g42430Os.9884.1.S1_at11/117+25402585..25404256expressed protein
LOC_Os07g42440Os.42814.1.S1_x_at11/117+25406651..25412086expressed protein
LOC_Os07g42440OsAffx.16684.1.S1_at10/117+25406651..25412086expressed protein
LOC_Os07g42450Os.8273.1.S1_s_at11/117+25411737..2541398940S ribosomal protein SA, putative, expressed
LOC_Os07g42450Os.8273.1.S1_at11/117+25411737..2541398940S ribosomal protein SA, putative, expressed
LOC_Os07g42460NANA7+25416580..25419714transposon protein, putative, unclassified
LOC_Os07g42470OsAffx.16685.1.S1_at11/117+25421546..25423670hypothetical protein
LOC_Os07g42490Os.9860.1.S1_at11/117+25427944..25433439Sucrose synthase 3, putative, expressed
LOC_Os07g42500Os.8759.1.S1_at10/117+25434067..25437987Senescence-associated, putative, expressed
LOC_Os07g42510Os.10293.1.S1_at11/117+25439123..25441000AP2 domain containing protein, expressed
LOC_Os07g42520Os.42812.1.A1_at11/117+25444852..25445626Dirigent-like protein, expressed
LOC_Os07g42530Os.35344.18.S1_x_at11/117+25447710..25453480transposon protein, putative, Mutator sub-class
LOC_Os07g42530Os.35344.3.S1_x_at8/117+25447710..25453480transposon protein, putative, Mutator sub-class
LOC_Os07g42530OsAffx.22940.5.S1_x_at3/117+25447710..25453480transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.16685.1.S1_at--797--2211Chr07:25421636..25421660 (25 bp)
ACAAGCAGCAACTGCGTGGTGTGCA
LOC_Os07g42470
OsAffx.16685.1.S1_at--820--7251Chr07:25421960..25421984 (25 bp)
GTCCTGTACCACGTTGCGAGGGCAA
LOC_Os07g42470
OsAffx.16685.1.S1_at--826--6671Chr07:25421972..25421996 (25 bp)
GTTGCGAGGGCAAGAACCTTCTTCG
LOC_Os07g42470
OsAffx.16685.1.S1_at--1107--7171Chr07:25422104..25422128 (25 bp)
GTCGGCAGGTTCTGGTACCACGCTT
LOC_Os07g42470
OsAffx.16685.1.S1_at--179--10571Chr07:25422140..25422164 (25 bp)
TTCTTCGCCCTCAAGAAGCATTACA
LOC_Os07g42470
OsAffx.16685.1.S1_at--276--9711Chr07:25422187..25422211 (25 bp)
TCAAGAAGGCCCTTGCTATCCAATT
LOC_Os07g42470
OsAffx.16685.1.S1_at--163--6451Chr07:25423361..25423385 (25 bp)
GATCAGCTGGATAACGTTTTTCTTC
LOC_Os07g42470
OsAffx.16685.1.S1_at--846--6811Chr07:25423376..25423400 (25 bp)
GTTTTTCTTCCTTATGATGCTTTTC
LOC_Os07g42470
OsAffx.16685.1.S1_at--974--6331Chr07:25423391..25423415 (25 bp)
GATGCTTTTCGGAGCATTGATCGCA
LOC_Os07g42470
OsAffx.16685.1.S1_at--1065--3591Chr07:25423405..25423429 (25 bp)
CATTGATCGCAAGCGCTGGTGCAGA
LOC_Os07g42470
OsAffx.16685.1.S1_at--404--8611Chr07:25423421..25423445 (25 bp)
TGGTGCAGACCAGACGAGCAATAAA
LOC_Os07g42470
Target Sequence 
ACAAGCAGCAACTGCGTGGTGTGCAGCACGGAGCCATCGCCGGAGTGGGTGGCCATCGGCTCGCCGGCCACCGCCGCCGC
CGGCGGCGACCTGCTCACGCCCGACGCCCTCGCCGAGCTGGCGGCGGCGGCGGCCGCGGCGCCCGAGGCCGACGACGACT
GGGCGGACTGCCGCTCTCGCGTGGTCCTGTACCACGTTGCGAGGGCAAGAACCTTCTTCGCCGGCGTTCTGCGTCGACGT
CCCGCCGCCGCCGCCGATCGCCGGCGAAGCGCCGGCGACGTCCTCGCCGAGCTCACGGCGGCGGCGGCGACGACCTCGGA
TGGCCGCGTCGGCAGGTTCTGGTACCACGCTTGCACGGGGACCTTCTTCGCCCTCAAGAAGCATTACAAGGCAATGAGGG
TTGAATGCAATCAAGAAGGCCCTTGCTATCCAATTTGGATCAGCTGGATAACGTTTTTCTTCCTTATGATGCTTTTCGGA
GCATTGATCGCAAGCGCTGGTGCAGACCAGACGAGCAATAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.16685.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis