Browse Element(s) Details


OsAffx.17396.1.S1_x_at

Description tigr:9636.m03858
TID=OsAffx.17396.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g383109/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g38240Os.24174.1.A1_at11/118+24105445..24109269transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os08g38250OsAffx.6065.1.S1_x_at11/118+24112203..24112802expressed protein
LOC_Os08g38260OsAffx.17395.1.S1_at11/118+24117056..24118347hypothetical protein
LOC_Os08g38270Os.55554.1.S1_at11/118+24119910..24121014Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
LOC_Os08g38270OsAffx.6066.1.S1_s_at11/118+24119910..24121014Fasciclin-like arabinogalactan protein 1 precursor, putative, expressed
LOC_Os08g38280Os.52746.1.S1_at11/118+24122115..24123689expressed protein
LOC_Os08g38289NANA8+24125232..24126109hypothetical protein
LOC_Os08g38300OsAffx.29587.1.S1_s_at11/118+24128481..24129312Histone H2B, putative, expressed
LOC_Os08g38300OsAffx.10929.1.S1_x_at2/118+24128481..24129312Histone H2B, putative, expressed
LOC_Os08g38310Os.53633.1.S1_x_at11/118+24130321..24137033expressed protein
LOC_Os08g38310OsAffx.17396.1.S1_at10/118+24130321..24137033expressed protein
LOC_Os08g38310OsAffx.17396.1.S1_x_at9/118+24130321..24137033expressed protein
LOC_Os08g38320Os.8660.1.S1_at11/118+24141188..24144560Protein kinase G11A, putative, expressed
LOC_Os08g38330OsAffx.32149.5.S1_at11/118+24146225..24147826F-box domain containing protein
LOC_Os08g38340Os.56244.1.S1_at11/118+24150017..24151534expressed protein
LOC_Os08g38350OsAffx.32149.1.S1_x_at11/118+24152694..24154403hypothetical protein
LOC_Os08g38350OsAffx.32149.1.S1_at11/118+24152694..24154403hypothetical protein
LOC_Os08g38350Os.29072.1.S1_at2/118+24152694..24154403hypothetical protein
LOC_Os08g38360OsAffx.32149.2.S1_at11/118+24155309..24156110F-box domain containing protein
LOC_Os08g38370OsAffx.17399.1.S1_at11/118+24158893..24161871Zinc finger C-x8-C-x5-C-x3-H type family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17396.1.S1_x_at--315--9111Chr08:24134737..24134761 (25 bp)
TGCTGAACTAGAGCGCGAGAGAGTA
LOC_Os08g38310
OsAffx.17396.1.S1_x_at--1--10551Chr08:24134873..24134897 (25 bp)
TTCATTGAAGAACCACGTAAACAGC
LOC_Os08g38310
OsAffx.17396.1.S1_x_at--730--3011Chr08:24134917..24134941 (25 bp)
AATGCATGCTGGGAACAGTCGGGAA
LOC_Os08g38310
OsAffx.17396.1.S1_x_at--829--2131Chr08:24134931..24134955 (25 bp)
ACAGTCGGGAAGATGCTAGTCAGAA
LOC_Os08g38310
OsAffx.17396.1.S1_x_at--1124--8211Chr08:24135176..24135200 (25 bp)
GGAATTCTGGAAGTTCTGGTCATCA
LOC_Os08g38310
OsAffx.17396.1.S1_x_at--319--3871NONE
CTGATGATGCCGATAAGTCCTATGA
NONE
OsAffx.17396.1.S1_x_at--148--1151Chr08:24135797..24135821 (25 bp)
AGTCCTATGAAATGTCTCCTTATGA
LOC_Os08g38310
OsAffx.17396.1.S1_x_at--900--5531Chr08:24135882..24135906 (25 bp)
GAAACATATTCCACCATGGACTCGG
LOC_Os08g38310
OsAffx.17396.1.S1_x_at--1002--4311NONE
CCATGGACTCGGGTTAACCTTACTG
NONE
OsAffx.17396.1.S1_x_at--940--3651Chr08:24136509..24136533 (25 bp)
CTTACTGGAGAGGAGTGGTTACCAC
LOC_Os08g38310
OsAffx.17396.1.S1_x_at--509--7511Chr08:24136523..24136547 (25 bp)
GTGGTTACCACACCCTGTGGTGATA
LOC_Os08g38310
Target Sequence 
TGCTGAACTAGAGCGCGAGAGAGTAAAGCAAGAGAGGGAGCAAAAACTTAAACAGATGGAGCAGAAGAAGAAAACGGATG
CTAGAAAGAGGCAGTGGGAAGATGATGGAAGGAAGGAAAAGGAGAAGAAAAAGAAATTCATTGAAGAACCACGTAAACAG
CAAAAACAGCTGGGAGAAAGAATGCATGCTGGGAACAGTCGGGAAGATGCTAGTCAGAAGGATCCTGATGACACAGAAAT
CAGGAAGAATACTGTCAGAGTAGTGATAAACCAATTATTATCTGATGAAAAGACAGAATCTTTTCCTATATTAGTAACAT
CTGGAAGCAACAATGTAAAAGCTGTGGTTGCAGATGGGAATTCTGGAAGTTCTGGTCATCAGATTCATGGAAGATTATCT
GATGATGCCGATAAGTCCTATGAAATGTCTCCTTATGAAGATTCTGATGAAGAGGATGGTGGTGACTTGGAGCACAAAGA
GAAAGTAAGGCGCAGACAGAAACATATTCCACCATGGACTCGGGTTAACCTTACTGGAGAGGAGTGGTTACCACACCCTG
TGGTGATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17396.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis