Browse Element(s) Details


OsAffx.17569.1.S1_at

Description tigr:9637.m00316
TID=OsAffx.17569.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g0470011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g04640OsAffx.22452.1.S1_x_at1/119+2474500..2476891hypothetical protein
LOC_Os09g04650OsAffx.7693.1.S1_x_at1/119+2477779..2478042hypothetical protein
LOC_Os09g04660Os.38764.1.S1_x_at8/119+2480419..2484993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04660Os.54151.1.S1_x_at2/119+2480419..2484993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04660Os.45173.1.S1_x_at2/119+2480419..2484993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04660OsAffx.31892.2.S1_x_at1/119+2480419..2484993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04660OsAffx.17842.1.S1_at1/119+2480419..2484993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04660OsAffx.29376.1.S1_x_at1/119+2480419..2484993retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04670Os.37769.1.S1_at11/119+2488844..2492529expressed protein
LOC_Os09g04680Os.26592.1.S1_s_at11/119+2493946..2495364Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os09g04680Os.26592.2.A1_s_at8/119+2493946..2495364Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os09g04680Os.26592.3.S1_x_at6/119+2493946..2495364Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os09g04680Os.26592.2.A1_x_at4/119+2493946..2495364Photosystem II P680 chlorophyll A apoprotein, putative
LOC_Os09g04690OsAffx.6175.1.S1_at11/119+2496167..2496809hypothetical protein
LOC_Os09g04700OsAffx.17569.1.S1_at11/119+2499021..2499313hypothetical protein
LOC_Os09g04710Os.20237.1.S1_at10/119+2500675..2503379GDSL-like Lipase/Acylhydrolase family protein, expressed
LOC_Os09g04720Os.53719.1.S1_at11/119+2504646..2507270SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os09g04720OsAffx.17570.1.S1_s_at11/119+2504646..2507270SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os09g04720OsAffx.17570.1.S1_at1/119+2504646..2507270SWIB complex BAF60b domain-containing protein, putative, expressed
LOC_Os09g04730Os.8274.1.S1_at10/119+2511446..2516209oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os09g04740OsAffx.22947.1.S1_x_at8/119+2521416..2526005retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04740OsAffx.22947.2.S1_x_at5/119+2521416..2526005retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04740OsAffx.22947.3.S1_x_at4/119+2521416..2526005retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os09g04740OsAffx.22947.5.S1_x_at2/119+2521416..2526005retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.17569.1.S1_at--511--7951Chr09:2499197..2499250 (25 bp)
GGATATGTGGAATTTATGCAGCAAC
LOC_Os09g04700
OsAffx.17569.1.S1_at--1018--8651Chr09:2499192..2499245 (25 bp)
TGTGGAATTTATGCAGCAACAACAA
LOC_Os09g04700
OsAffx.17569.1.S1_at--247--2471Chr09:2499172..2499196 (25 bp)
AACAACAGCTACAGAAGGCGGCCAT
LOC_Os09g04700
OsAffx.17569.1.S1_at--692--3271Chr09:2499170..2499194 (25 bp)
CAACAGCTACAGAAGGCGGCCATGC
LOC_Os09g04700
OsAffx.17569.1.S1_at--1031--8431Chr09:2499153..2499177 (25 bp)
GGCCATGCATGCAAGATCCGCCGCA
LOC_Os09g04700
OsAffx.17569.1.S1_at--1116--6351Chr09:2499139..2499163 (25 bp)
GATCCGCCGCAACAACAAGACCGAT
LOC_Os09g04700
OsAffx.17569.1.S1_at--654--2631Chr09:2499109..2499133 (25 bp)
AACCTCCTGCAACGTCTGTGTCCAT
LOC_Os09g04700
OsAffx.17569.1.S1_at--216--9271Chr09:2499105..2499129 (25 bp)
TCCTGCAACGTCTGTGTCCATGCTA
LOC_Os09g04700
OsAffx.17569.1.S1_at--1042--3251Chr09:2499100..2499124 (25 bp)
CAACGTCTGTGTCCATGCTACCCGT
LOC_Os09g04700
OsAffx.17569.1.S1_at--527--9951Chr09:2499057..2499081 (25 bp)
TACGCCTGTGCCAACACCGGTTGCA
LOC_Os09g04700
OsAffx.17569.1.S1_at--537--4471Chr09:2499054..2499078 (25 bp)
GCCTGTGCCAACACCGGTTGCATCA
LOC_Os09g04700
Target Sequence 
GGATATGTGGAATTTATGCAGCAACAACAACAGCTACAGAAGGCGGCCATGCATGCAAGATCCGCCGCAACAACAAGACC
GATCGCCCAACCTCCTGCAACGTCTGTGTCCATGCTACCCGTGCCAGTGCCTCCACTGCCTACGCCTGTGCCAACACCGG
TTGCATCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.17569.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis