Browse Element(s) Details


OsAffx.1782.1.S1_x_at

Description gb:NM_183834.1
DB_XREF= gi:34894795
GEN=P0537A05.25
TID=OsAffx.1782.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0537A05.25 (P0537A05.25), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g402901/11Pectinacetylesterase family protein, expressed
LOC_Os07g090501/11exostosin family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g40260Os.37700.1.S1_at10/1110+21239654..21251008expressed protein
LOC_Os10g40270OsAffx.20150.1.S1_at11/1110+21255322..21257922pollen-specific kinase partner protein, putative, expressed
LOC_Os10g40280Os.46822.2.S1_x_at11/1110+21263044..21264491expressed protein
LOC_Os10g40280Os.46822.1.S1_at11/1110+21263044..21264491expressed protein
LOC_Os10g40290Os.52091.1.S1_at9/1110+21264603..21269554Pectinacetylesterase family protein, expressed
LOC_Os10g40290OsAffx.1782.1.S1_x_at1/1110+21264603..21269554Pectinacetylesterase family protein, expressed
LOC_Os10g40290OsAffx.17966.1.S1_at1/1110+21264603..21269554Pectinacetylesterase family protein, expressed
LOC_Os10g40300OsAffx.30733.1.S1_x_at11/1110+21270566..21271210hypothetical protein
LOC_Os10g40324OsAffx.30734.1.S1_at11/1110+21271909..21283297hypothetical protein
LOC_Os10g40324OsAffx.30734.1.S1_x_at11/1110+21271909..21283297hypothetical protein
LOC_Os10g40324Os.46515.1.S1_at1/1110+21271909..21283297hypothetical protein
LOC_Os10g40350OsAffx.7920.1.S1_at11/1110+21285192..21286250expressed protein
LOC_Os10g40360Os.2881.1.S1_at10/1110+21288526..21290890Proline dehydrogenase family protein, expressed
LOC_Os10g40370Os.31837.2.S1_x_at11/1110+21293934..21295071expressed protein
LOC_Os10g40370Os.31837.1.A1_at11/1110+21293934..21295071expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
GO:0003824molecular_functioncatalytic activity
GO:0016789molecular_functioncarboxylic ester hydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1782.1.S1_x_at--882--6451Chr01:12633186..12633210 (25 bp)
GATAAAGAAGACACCGCTGCTGCTC
NONE
OsAffx.1782.1.S1_x_at--628--1451Chr01:12633181..12633205 (25 bp)
AGAAGACACCGCTGCTGCTCGGCCT
NONE
OsAffx.1782.1.S1_x_at--568--9092Chr12:11844417..11844443 (23 bp)
TGCTCGGCCTCAACGACGGCGACGA
NONE
OsAffx.1782.1.S1_x_at--953--1071Chr01:12633102..12633126 (25 bp)
AGGGCGGTAGCAGCAGGCAGCTCCT
NONE
OsAffx.1782.1.S1_x_at--861--1591Chr01:12633084..12633108 (25 bp)
AGCTCCTGCGGCCATGGCGGCTCTT
NONE
OsAffx.1782.1.S1_x_at--720--8436Chr08:3183556..3184032 (25 bp)
GGCCATGGCGGCTCTTCTTCTTCTT
NONE
OsAffx.1782.1.S1_x_at--4--9511Chr01:12633051..12633075 (25 bp)
TCTCCTCTCCCTCGTGTGAGTCGTG
NONE
OsAffx.1782.1.S1_x_at--744--7471Chr01:12633038..12633062 (25 bp)
GTGTGAGTCGTGTCCTCGTGTTTGC
NONE
OsAffx.1782.1.S1_x_at--636--1151Chr01:12633033..12633057 (25 bp)
AGTCGTGTCCTCGTGTTTGCCTGGT
NONE
OsAffx.1782.1.S1_x_at--270--8711Chr01:12633028..12633052 (25 bp)
TGTCCTCGTGTTTGCCTGGTTGTCA
NONE
OsAffx.1782.1.S1_x_at--560--9411Chr01:12633023..12633047 (25 bp)
TCGTGTTTGCCTGGTTGTCACTTGT
NONE
Target Sequence 
GATAAAGAAGACACCGCTGCTGCTCGGCCTCAACGACGGCGACGAGGGCGGTAGCAGCAGGCAGCTCCTGCGGCCATGGC
GGCTCTTCTTCTTCTTCTCCTCTCCCTCGTGTGAGTCGTGTCCTCGTGTTTGCCTGGTTGTCACTTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1782.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis