Browse Element(s) Details


OsAffx.18062.1.S1_x_at

Description tigr:9637.m03420
TID=OsAffx.18062.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=AP2 domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os09g3985011/11ethylene response factor ERF1, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os09g39820OsAffx.21171.3.S1_x_at2/119+22828444..22834333retrotransposon protein, putative, unclassified
LOC_Os09g39820OsAffx.20729.1.S1_x_at2/119+22828444..22834333retrotransposon protein, putative, unclassified
LOC_Os09g39820OsAffx.21171.5.S1_x_at1/119+22828444..22834333retrotransposon protein, putative, unclassified
LOC_Os09g39830OsAffx.22927.2.S1_x_at1/119+22834728..22838121retrotransposon protein, putative, unclassified
LOC_Os09g39830OsAffx.22894.1.S1_at1/119+22834728..22838121retrotransposon protein, putative, unclassified
LOC_Os09g39830OsAffx.22711.4.A1_x_at1/119+22834728..22838121retrotransposon protein, putative, unclassified
LOC_Os09g39830OsAffx.22927.1.S1_x_at1/119+22834728..22838121retrotransposon protein, putative, unclassified
LOC_Os09g39840NANA9+22838562..22839161retrotransposon protein, putative, unclassified
LOC_Os09g39850OsAffx.18062.1.S1_x_at11/119+22846805..22847455ethylene response factor ERF1, putative
LOC_Os09g39860Os.52353.1.S2_at11/119+22851868..22853942expressed protein
LOC_Os09g39860Os.52353.1.S1_at11/119+22851868..22853942expressed protein
LOC_Os09g39870Os.6306.1.S1_at11/119+22854836..228586012-phosphoglycerate kinase, putative, expressed
LOC_Os09g39870Os.6306.1.S2_at11/119+22854836..228586012-phosphoglycerate kinase, putative, expressed
LOC_Os09g39880OsAffx.9045.1.S1_x_at4/119+22862064..22866509hypothetical protein
LOC_Os09g39880OsAffx.9045.1.S1_at3/119+22862064..22866509hypothetical protein
LOC_Os09g39890Os.31312.1.S1_at8/119+22867656..22871158retrotransposon protein, putative, unclassified
LOC_Os09g39890Os.31312.5.S1_x_at5/119+22867656..22871158retrotransposon protein, putative, unclassified
LOC_Os09g39890Os.31312.2.S1_x_at4/119+22867656..22871158retrotransposon protein, putative, unclassified
LOC_Os09g39900NANA9+22871482..22877637retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0009867biological_processjasmonic acid mediated signaling pathway
GO:0009873biological_processethylene mediated signaling pathway
GO:0042829biological_processdefense response to pathogen
GO:0005634cellular_componentnucleus
GO:0005643cellular_componentnuclear pore
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
GO:0016563molecular_functiontranscriptional activator activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18062.1.S1_x_at--835--1851Chr09:22846908..22846932 (25 bp)
ACGACTCCGACATGCGAGCATCAGC
LOC_Os09g39850
OsAffx.18062.1.S1_x_at--857--1511Chr09:22846936..22846960 (25 bp)
AGCAGCTGAGCCTGAGCACCGGAGG
LOC_Os09g39850
OsAffx.18062.1.S1_x_at--668--1491Chr09:22846950..22846974 (25 bp)
AGCACCGGAGGAGCCCTGCACCGCC
LOC_Os09g39850
OsAffx.18062.1.S1_x_at--5--1811Chr09:22847054..22847078 (25 bp)
ACCCGCAAGGGTGCTCGCGTGTGGC
LOC_Os09g39850
OsAffx.18062.1.S1_x_at--184--10631Chr09:22847087..22847111 (25 bp)
TTCGACAGCCCAGAGGCCGCCGCCA
LOC_Os09g39850
OsAffx.18062.1.S1_x_at--434--4651Chr09:22847178..22847202 (25 bp)
GCGTCCAGGAGTCGCTCCAGGCACT
LOC_Os09g39850
OsAffx.18062.1.S1_x_at--580--7271Chr09:22847180..22847204 (25 bp)
GTCCAGGAGTCGCTCCAGGCACTCG
LOC_Os09g39850
OsAffx.18062.1.S1_x_at--221--6171Chr09:22847220..22847244 (25 bp)
GAGGATCGCCGGTACTCGCCCTCAA
LOC_Os09g39850
OsAffx.18062.1.S1_x_at--487--3231Chr09:22847281..22847305 (25 bp)
CAAGCACATGCTGCTCATGCAACAA
LOC_Os09g39850
OsAffx.18062.1.S1_x_at--454--3531Chr09:22847287..22847311 (25 bp)
CATGCTGCTCATGCAACAACAACAA
LOC_Os09g39850
OsAffx.18062.1.S1_x_at--556--2411Chr09:22847304..22847328 (25 bp)
AACAACAACAAGAGCCGACGGTGGT
LOC_Os09g39850
Target Sequence 
ACGACTCCGACATGCGAGCATCAGCAGCAGCAGCTGAGCCTGAGCACCGGAGGAGCCCTGCACCGCCGCCGCCACCGAGG
CAGCAGCAGTTGATCGGGGTGCGGAAGCGTCCATGGGGCAAGTTCGCCGCCGAGATCCGCGACTCCACCCGCAAGGGTGC
TCGCGTGTGGCTGGGCACCTTCGACAGCCCAGAGGCCGCCGCCATGGCCTACGACCAGGCCGCCTTCTCCGTCCGGGGCG
CCTCCGCCGTCCTCAACTTCCCCCTCCACCGCGTCCAGGAGTCGCTCCAGGCACTCGCCCTCGGCGCCGCCGGAGGATCG
CCGGTACTCGCCCTCAAGCGCCGCCACTCCATCCGCAAGCGCCGCAAGCCTACCAAGCACATGCTGCTCATGCAACAACA
ACAACAAGAGCCGACGGTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18062.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis