Browse Element(s) Details


OsAffx.18617.1.S1_at

Description tigr:9639.m00033
TID=OsAffx.18617.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 6334-1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os12g0139011/11Clathrin heavy chain, putative, expressed
LOC_Os11g0138011/11Clathrin heavy chain, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os12g01360Os.7309.1.S1_at11/1112+219457..224793expressed protein
LOC_Os12g01360Os.7309.2.S1_at10/1112+219457..224793expressed protein
LOC_Os12g01370Os.152.1.S1_at11/1112+225239..229184Omega-3 fatty acid desaturase, chloroplast precursor, putative, expressed
LOC_Os12g01380Os.8201.1.S1_at11/1112+241968..246389expressed protein
LOC_Os12g01380Os.8201.1.S1_x_at11/1112+241968..246389expressed protein
LOC_Os12g01380OsAffx.18618.1.S1_at10/1112+241968..246389expressed protein
LOC_Os12g01390Os.5886.1.S1_at11/1112+248725..258873Clathrin heavy chain, putative, expressed
LOC_Os12g01390OsAffx.18617.1.S1_at11/1112+248725..258873Clathrin heavy chain, putative, expressed
LOC_Os12g01400OsAffx.19445.1.S1_at11/1112+259581..260030EF hand family protein
LOC_Os12g01410OsAffx.31538.1.S1_at11/1112+262452..264165hypothetical protein
LOC_Os12g01420OsAffx.31539.1.S1_at11/1112+264610..265986Ammonium Transporter family protein
LOC_Os12g01430Os.9537.1.S1_s_at5/1112+266954..270307ribosomal protein L10 containing protein
LOC_Os12g01430OsAffx.7454.1.S1_at2/1112+266954..270307ribosomal protein L10 containing protein
LOC_Os12g01430Os.53113.1.A1_at1/1112+266954..270307ribosomal protein L10 containing protein
LOC_Os12g01430OsAffx.24713.1.S1_x_at1/1112+266954..270307ribosomal protein L10 containing protein
LOC_Os12g01430Os.24578.1.A1_at1/1112+266954..270307ribosomal protein L10 containing protein
LOC_Os12g01449Os.11394.1.S1_at11/1112+272634..281070expressed protein
LOC_Os12g01449OsAffx.28164.2.S1_at1/1112+272634..281070expressed protein
LOC_Os12g01449Os.46481.2.S1_x_at1/1112+272634..281070expressed protein
LOC_Os12g01470NANA12+282777..287007retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
GO:0005198molecular_functionstructural molecule activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.18617.1.S1_at--111--7092Chr12:253234..253258 (25 bp)
GTCAACTTTGCGCTCATGATGTCAC
LOC_Os12g01390
OsAffx.18617.1.S1_at--237--5912Chr12:253479..253503 (25 bp)
GAGCATGCTTTTCTTCAAACCAAGG
LOC_Os12g01390
OsAffx.18617.1.S1_at--383--7832Chr12:253640..253664 (25 bp)
GGTCACTTACCCAAATGTTGCTGAT
LOC_Os12g01390
OsAffx.18617.1.S1_at--627--8792Chr12:253684..253708 (25 bp)
TGTTCAGTCATTATGATCGCCCTCG
LOC_Os12g01390
OsAffx.18617.1.S1_at--243--4292Chr12:253704..253728 (25 bp)
CCTCGTGTTGCTCAGCTTTGTGAAA
LOC_Os12g01390
OsAffx.18617.1.S1_at--761--2292Chr12:253727..253751 (25 bp)
AAAGGCTGGCTTGTACTTGCGAGCT
LOC_Os12g01390
OsAffx.18617.1.S1_at--452--5912Chr12:253747..253850 (25 bp)
GAGCTCTCCAGCATTACACAGAATT
LOC_Os12g01390
OsAffx.18617.1.S1_at--248--8612Chr12:253871..253895 (25 bp)
TGGTGAATACCCATGCCATTGAGCC
LOC_Os12g01390
OsAffx.18617.1.S1_at--1056--5852Chr12:253891..253994 (25 bp)
GAGCCACAGGCACTTGTTGAGTTCT
LOC_Os12g01390
OsAffx.18617.1.S1_at--980--6052Chr12:253988..254012 (25 bp)
GAGTTCTTTGGCACTCTTTCAAGAG
LOC_Os12g01390
OsAffx.18617.1.S1_at--345--5312Chr12:254032..254056 (25 bp)
GAAGGACCTTCTGCTGGTCAATCTA
LOC_Os12g01390
Target Sequence 
GTCAACTTTGCGCTCATGATGTCACAAATGGAGGGGGGCTGTCCAGTTGATTACAATACTATAACTGATCTCTTCCTTCA
GAGAAACATGATACGTGAGGCAACAGCTTTCCTGCTGGATGTTTTAAAGCCAAACTTGCCGGAGCATGCTTTTCTTCAAA
CCAAGGTTTTGGAGATCAACTTGGTCACTTACCCAAATGTTGCTGATGCCATCCTTGCTAATGGTATGTTCAGTCATTAT
GATCGCCCTCGTGTTGCTCAGCTTTGTGAAAAGGCTGGCTTGTACTTGCGAGCTCTCCAGCATTACACAGAATTACCAGA
TATCAAGCGTGTCATGGTGAATACCCATGCCATTGAGCCACAGGCACTTGTTGAGTTCTTTGGCACTCTTTCAAGAGAGT
GGGCTTTGGAGTGCATGAAGGACCTTCTGCTGGTCAATCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.18617.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis