Browse Element(s) Details


OsAffx.2006.1.S1_at

Description tigr:9629.m01442
TID=OsAffx.2006.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1462011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g14570NANA1+8160665..8163814transposon protein, putative, unclassified
LOC_Os01g14580Os.872.1.S1_at11/111+8167111..8172705Isocitrate dehydrogenase, putative, expressed
LOC_Os01g14580Os.54965.1.S1_at1/111+8167111..8172705Isocitrate dehydrogenase, putative, expressed
LOC_Os01g14590Os.872.2.S1_at10/111+8172179..8174691Pathogen-related protein, putative, expressed
LOC_Os01g14610Os.874.1.S1_at11/111+8175701..8179897DNA replication complex GINS protein PSF2, putative, expressed
LOC_Os01g14620OsAffx.2006.1.S1_at11/111+8187070..8187456hypothetical protein
LOC_Os01g14630OsAffx.23247.1.S1_x_at11/111+8188140..8189263Polyprenyl synthetase family protein, expressed
LOC_Os01g14630OsAffx.23247.1.S1_at11/111+8188140..8189263Polyprenyl synthetase family protein, expressed
LOC_Os01g14640Os.51423.1.S1_x_at11/111+8190272..8191058expressed protein
LOC_Os01g14640OsAffx.22036.1.S1_x_at11/111+8190272..8191058expressed protein
LOC_Os01g14640OsAffx.22036.1.S1_at11/111+8190272..8191058expressed protein
LOC_Os01g14640Os.51423.1.S1_at11/111+8190272..8191058expressed protein
LOC_Os01g14650Os.28773.1.S1_at11/111+8192885..8193955Alpha-expansin 15 precursor, putative, expressed
LOC_Os01g14650OsAffx.8085.1.S1_x_at1/111+8192885..8193955Alpha-expansin 15 precursor, putative, expressed
LOC_Os01g14660OsAffx.22035.1.S1_x_at11/111+8198724..8199586Alpha-expansin 4 precursor, putative, expressed
LOC_Os01g14670Os.12851.1.S1_at11/111+8200632..8203771Nectarin-1 precursor, putative, expressed
LOC_Os01g14670OsAffx.30146.1.S1_s_at1/111+8200632..8203771Nectarin-1 precursor, putative, expressed
LOC_Os01g14690Os.37966.1.S1_a_at11/111+8209230..8211935expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2006.1.S1_at--167--5591Chr01:8187398..8187422 (25 bp)
GAAATGTAAGGCACACCGCTGCAGC
LOC_Os01g14620
OsAffx.2006.1.S1_at--1126--10091Chr01:8187352..8187376 (25 bp)
TATGTCATTGGATATTGTCGAGGAG
LOC_Os01g14620
OsAffx.2006.1.S1_at--615--6151Chr01:8187312..8187336 (25 bp)
GAGGTAACATCCAATGCCATATCTA
LOC_Os01g14620
OsAffx.2006.1.S1_at--1029--9391Chr01:8187269..8187293 (25 bp)
TCGTAGCGGTGTGTGTTCGGGCAAA
LOC_Os01g14620
OsAffx.2006.1.S1_at--251--3951Chr01:8187206..8187230 (25 bp)
CGGAGGATGGCAATTGCAACATCAG
LOC_Os01g14620
OsAffx.2006.1.S1_at--350--5151Chr01:8187191..8187215 (25 bp)
GCAACATCAGGAATAATCGCCCAAA
LOC_Os01g14620
OsAffx.2006.1.S1_at--1050--351Chr01:8187179..8187203 (25 bp)
ATAATCGCCCAAAAAGCTCGGCCAG
LOC_Os01g14620
OsAffx.2006.1.S1_at--802--2351Chr01:8187167..8187191 (25 bp)
AAAGCTCGGCCAGCACGGGCAAAAA
LOC_Os01g14620
OsAffx.2006.1.S1_at--700--9351Chr01:8187141..8187165 (25 bp)
TCGAAGGGTTTGTTACATATGCAAA
LOC_Os01g14620
OsAffx.2006.1.S1_at--579--651Chr01:8187123..8187147 (25 bp)
ATGCAAAATTACAACTCTACCCCTT
LOC_Os01g14620
OsAffx.2006.1.S1_at--1157--4171Chr01:8187103..8187127 (25 bp)
CCCTTCCACATCACTATTTCTATGG
LOC_Os01g14620
Target Sequence 
GAAATGTAAGGCACACCGCTGCAGCGTCACTCTTCCTTCCTCTAGATATGTCATTGGATATTGTCGAGGAGGATGGATTG
GGAGTGGAGGTAACATCCAATGCCATATCTAGAGGAAGGAAGGGCGATGTCGTAGCGGTGTGTGTTCGGGCAAATGGGGA
GGCTGCAGCTGTGATCAGATGTGAATGGGTGACGGAGGATGGCAATTGCAACATCAGGAATAATCGCCCAAAAAGCTCGG
CCAGCACGGGCAAAAAATCGAAGGGTTTGTTACATATGCAAAATTACAACTCTACCCCTTCCACATCACTATTTCTATGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2006.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis