Browse Element(s) Details


OsAffx.20218.1.S1_at

Description tigr:9638.m03222
TID=OsAffx.20218.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os10g3622910/11Mov34/MPN/PAD-1 family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os10g36180Os.46582.1.S1_at11/1110+19016726..19018655expressed protein
LOC_Os10g36180Os.46582.2.S1_x_at6/1110+19016726..19018655expressed protein
LOC_Os10g36190OsAffx.6884.1.S1_at11/1110+19020553..19022076pentatricopeptide, putative
LOC_Os10g36200Os.46151.1.S1_at11/1110+19023386..19024471heavy-metal-associated domain-containing protein, putative, expressed
LOC_Os10g36210OsAffx.7986.1.S1_at10/1110+19026685..19033558Valyl-tRNA synthetase, putative
LOC_Os10g36229OsAffx.20218.1.S1_at10/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229OsAffx.30686.1.S1_x_at10/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229OsAffx.30686.1.S1_at9/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229Os.24397.1.S1_at2/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229OsAffx.29482.3.S1_x_at1/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229Os.51402.1.S2_at1/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36229OsAffx.29482.5.S1_x_at1/1110+19034400..19044200Mov34/MPN/PAD-1 family protein
LOC_Os10g36250Os.46528.1.S1_at11/1110+19044511..19049905TPR Domain containing protein, expressed
LOC_Os10g36260Os.27780.2.S2_a_at11/1110+19050159..19052425expressed protein
LOC_Os10g36260Os.27780.2.S1_a_at11/1110+19050159..19052425expressed protein
LOC_Os10g36260Os.47621.1.S1_x_at1/1110+19050159..19052425expressed protein
LOC_Os10g36270Os.46510.1.S1_at11/1110+19059417..19067133Leucine Rich Repeat family protein, expressed
LOC_Os10g36270Os.46510.2.S1_x_at11/1110+19059417..19067133Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000338biological_processprotein deneddylation
GO:0006511biological_processubiquitin-dependent protein catabolism
GO:0007275biological_processdevelopment
GO:0009640biological_processphotomorphogenesis
GO:0030163biological_processprotein catabolism
GO:0005634cellular_componentnucleus
GO:0008180cellular_componentsignalosome complex
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20218.1.S1_at--736--1051Chr10:19041919..19041940 (22 bp)
AGGGATATTAGGAGCTGGGCATCGA
LOC_Os10g36229
OsAffx.20218.1.S1_at--50--6691Chr10:19042159..19042183 (25 bp)
GTTGCCATCACCACACAGGATCCTC
LOC_Os10g36229
OsAffx.20218.1.S1_at--692--8391Chr10:19042217..19042241 (25 bp)
GGCGCCATCTTTATCACCAACAGGA
LOC_Os10g36229
OsAffx.20218.1.S1_at--758--4551Chr10:19042218..19042242 (25 bp)
GCGCCATCTTTATCACCAACAGGAT
LOC_Os10g36229
OsAffx.20218.1.S1_at--717--4431Chr10:19042220..19042244 (25 bp)
GCCATCTTTATCACCAACAGGATCC
LOC_Os10g36229
OsAffx.20218.1.S1_at--105--3671Chr10:19042225..19042249 (25 bp)
CTTTATCACCAACAGGATCCTTTGC
LOC_Os10g36229
OsAffx.20218.1.S1_at--635--10151Chr10:19042228..19042252 (25 bp)
TATCACCAACAGGATCCTTTGCCGT
LOC_Os10g36229
OsAffx.20218.1.S1_at--556--1691Chr10:19042232..19042256 (25 bp)
ACCAACAGGATCCTTTGCCGTCCAT
LOC_Os10g36229
OsAffx.20218.1.S1_at--740--3251Chr10:19042234..19042258 (25 bp)
CAACAGGATCCTTTGCCGTCCATGC
LOC_Os10g36229
OsAffx.20218.1.S1_at--1138--9391Chr10:19042316..19042340 (25 bp)
TCGTCTGCGCTACTCCCACGGAGGC
LOC_Os10g36229
OsAffx.20218.1.S1_at--286--7231NONE
TATCCCAACGGGATTCCGGAAGTGG
NONE
Target Sequence 
AGGGATATTAGGAGCTGGGCATCGAGGCGTCGTTGCCGGCGGCCGCGTCCTCCCCTGTCCACGCTCCACACCGAACCCGA
ACCTCGTCGCCGGCAGCCGCATCCTCCCCCGTCCACGGTCCACATCGGAGCTCATCGCCGGCGACCGCATCCTCCGTCGG
GAGCTCGTCACCGGCGGCCGCGTCCGTCGTCCACGCCTTAGCCGGCGGCCGCGTCCTCCACGCCGAAGCTCGTCGCCGGT
GCCGTTGCCATCACCACACAGGATCCTCCACCGTCCACGCCCCACGTCAGAGCTCGTCGCCGGCGCCATCTTTATCACCA
ACAGGATCCTTTGCCGTCCATGCGACCATGCCCCACGCCGGAGCTCGCCGGCGGCCGCGTCCGCGCCGCCGGTGTCAGCC
TCGTCTGCGCTACTCCCACGGAGGCCCGCGCTCTCGCGTCTGAGGGAGGTGGAGAGGGAGCGATCCCGTTGGGACAGTAT
CCCAACGGGATTCCGGAAGTGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20218.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis