Browse Element(s) Details

OsAffx.20681.1.S1_at

Description

tigr:9634.m01048
TID=OsAffx.20681.1
CNT=3
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Integral membrane protein, putative
REP_ORG=O. sativa

Associated TIGR Gene Locus

TIGR Locus	Matching Probes	Description
LOC_Os06g10750	9/11	nodulin MtN21 family protein, putative, expressed
LOC_Os10g09710	1/11	hypothetical protein

Gene Context (flanking 25kb)

TIGR Locus	Matching Probeset	Matching Probes	Chr	Strand	Coordinates	Description
LOC_Os06g10710	OsAffx.4792.1.S1_at	11/11	6	+	5587422..5588312	hypothetical protein
LOC_Os06g10720	NA	NA	6	+	5596521..5596826	hypothetical protein
LOC_Os06g10730	Os.36396.1.S1_at	11/11	6	+	5600764..5603983	expressed protein
LOC_Os06g10740	OsAffx.12861.2.S1_x_at	11/11	6	+	5607405..5610438	hAT family dimerisation domain containing protein
LOC_Os06g10740	OsAffx.12861.3.S1_x_at	9/11	6	+	5607405..5610438	hAT family dimerisation domain containing protein
LOC_Os06g10750	OsAffx.20681.1.S1_s_at	11/11	6	+	5613005..5615986	nodulin MtN21 family protein, putative, expressed
LOC_Os06g10750	OsAffx.20681.1.S1_at	9/11	6	+	5613005..5615986	nodulin MtN21 family protein, putative, expressed
LOC_Os06g10750	OsAffx.3165.1.S1_at	1/11	6	+	5613005..5615986	nodulin MtN21 family protein, putative, expressed
LOC_Os06g10760	Os.13510.1.S1_at	10/11	6	+	5618151..5620735	emp24/gp25L/p24 family protein, expressed
LOC_Os06g10770	Os.4905.4.S1_a_at	11/11	6	+	5620965..5624688	N-acyl-L-amino-acid amidohydrolase family protein, expressed
LOC_Os06g10770	Os.4905.4.S1_at	11/11	6	+	5620965..5624688	N-acyl-L-amino-acid amidohydrolase family protein, expressed
LOC_Os06g10780	OsAffx.27557.2.S1_at	11/11	6	+	5628417..5630683	AP2 domain containing protein, expressed
LOC_Os06g10790	Os.17411.1.S1_at	11/11	6	+	5632355..5634722	Protein kinase domain containing protein, expressed
LOC_Os06g10800	NA	NA	6	+	5635937..5636932	Zinc finger, C3HC4 type family protein, expressed
LOC_Os06g10810	Os.9395.1.S1_at	11/11	6	+	5637278..5640570	Phosphate carrier protein, mitochondrial precursor, putative, expressed

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Gene Ontology Classification

GO id	Type	Name
GO:0016020	cellular_component	membrane

Probe Info

Probe Name	Hit(s)	Location	Sequence	TIGR Locus
OsAffx.20681.1.S1_at--393--969	2	Chr10:5013833..5013943 (25 bp)	TCACTCTTGGAAGTGTGATCGGCGC	LOC_Os10g09710
OsAffx.20681.1.S1_at--515--663	1	Chr06:5615920..5615944 (25 bp)	GTTGTGACGTACTCTCTGCAATCGT	LOC_Os06g10750
OsAffx.20681.1.S1_at--212--1081	1	Chr06:5615921..5615945 (25 bp)	TTGTGACGTACTCTCTGCAATCGTG	LOC_Os06g10750
OsAffx.20681.1.S1_at--659--867	1	Chr06:5615922..5615946 (25 bp)	TGTGACGTACTCTCTGCAATCGTGG	LOC_Os06g10750
OsAffx.20681.1.S1_at--945--737	1	Chr06:5615923..5615947 (25 bp)	GTGACGTACTCTCTGCAATCGTGGA	LOC_Os06g10750
OsAffx.20681.1.S1_at--169--895	1	Chr06:5615924..5615948 (25 bp)	TGACGTACTCTCTGCAATCGTGGAG	LOC_Os06g10750
OsAffx.20681.1.S1_at--967--575	1	Chr06:5615925..5615949 (25 bp)	GACGTACTCTCTGCAATCGTGGAGA	LOC_Os06g10750
OsAffx.20681.1.S1_at--707--189	1	Chr06:5615926..5615950 (25 bp)	ACGTACTCTCTGCAATCGTGGAGAC	LOC_Os06g10750
OsAffx.20681.1.S1_at--363--403	1	Chr06:5615927..5615951 (25 bp)	CGTACTCTCTGCAATCGTGGAGACG	LOC_Os06g10750

Target Sequence

TCACTCTTGGAAGTGTGATCGGCGCGGTGATCATAGNGGTGGGGCTCTACGCGCTCATCTGGGGCNAGGGCGGCGACCAC
GCCGACAACGGCAAGCCGCCGGCCGCCGCCGCCGCCGCGCCGGAGAAGGGCTTGCCATTGACCACGCTGCAGGCCAACGG
CGACGGCGACGGCAAGCTTGCTGTGCTCGTCGCCGACGTCGAGATGCCGGCGGTGAAGGATGTCTACTAGCTTCTCTCTG
ACTCTCTGTGTGTATGTGCGTGCAACAATGTGCATGCATGGTCGATCGCCTCTTGCGTGCAAACGGTGTTAATTTGAGGG
GTAATTAAGATGGTTTAGATTGTTGATTAGTAATTAATTAGCTGTGTGAGTTAATGATGGATAAGATATACTACGCAAGT
GTTATGAAAGTGTTATGCATGTAGCGTTGTCTGTTGTGACGTACTCTCTGCAATCGTGGAGACG

BLASTn GenBank NR

Expression Profiles

Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS MPSS logo

RiceArray Coexpression Database

Miscellaneous

SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:

Putative homologies in rice

Putative homologies in arabidopsis