Browse Element(s) Details


OsAffx.20707.5.S1_at

Description tigr:9633.m01690
TID=OsAffx.20707.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Rpp14 family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g187809/11Rpp14 family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g18760OsAffx.22848.3.S1_x_at3/115+10854454..10860411retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g18760OsAffx.22848.4.S1_x_at2/115+10854454..10860411retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g18760OsAffx.22848.4.S1_at2/115+10854454..10860411retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g18770Os.6431.1.S1_at11/115+10862750..10866011expressed protein
LOC_Os05g18774Os.49326.1.S1_at11/115+10879008..10880118Protein phosphatase inhibitor containing protein, expressed
LOC_Os05g18774Os.49326.1.S1_x_at10/115+10879008..10880118Protein phosphatase inhibitor containing protein, expressed
LOC_Os05g18780OsAffx.20707.5.S1_at9/115+10881645..10884684Rpp14 family protein, expressed
LOC_Os05g18780Os.36435.2.S1_x_at8/115+10881645..10884684Rpp14 family protein, expressed
LOC_Os05g18780OsAffx.20707.2.S1_x_at2/115+10881645..10884684Rpp14 family protein, expressed
LOC_Os05g18780OsAffx.20707.1.S1_x_at1/115+10881645..10884684Rpp14 family protein, expressed
LOC_Os05g18780Os.55138.1.S1_x_at1/115+10881645..10884684Rpp14 family protein, expressed
LOC_Os05g18780OsAffx.10665.2.S1_at1/115+10881645..10884684Rpp14 family protein, expressed
LOC_Os05g18780OsAffx.20707.2.S1_at1/115+10881645..10884684Rpp14 family protein, expressed
LOC_Os05g18790Os.49426.1.S1_at2/115+10893553..10895516Phosphoribosylglycinamide formyltransferase, chloroplast precursor, putative, expressed
LOC_Os05g18800OsAffx.14753.1.S1_at10/115+10898082..10900858hypothetical protein
LOC_Os05g18800Os.33928.2.S1_at1/115+10898082..10900858hypothetical protein
LOC_Os05g18810NANA5+10902979..10911281transposon protein, putative, CACTA, En/Spm sub-class

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Gene Ontology Classification
GO idTypeName
GO:0006950biological_processresponse to stress
GO:0008033biological_processtRNA processing
GO:0008615biological_processpyridoxine biosynthesis
GO:0042819biological_processvitamin B6 biosynthesis
GO:0005829cellular_componentcytosol
GO:0005886cellular_componentplasma membrane
GO:0012505cellular_componentendomembrane system
GO:0004526molecular_functionribonuclease P activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.20707.5.S1_at--932--8071NONE
GGAGCTCTGCCCGAATAGGTACATG
NONE
OsAffx.20707.5.S1_at--411--9491NONE
TCTGCCCGAATAGGTACATGGTGAT
NONE
OsAffx.20707.5.S1_at--360--4951Chr05:10883155..10883179 (25 bp)
GCATTCATCGATACGGCAGGCAAGG
LOC_Os05g18780
OsAffx.20707.5.S1_at--785--511Chr05:10883149..10883173 (25 bp)
ATCGATACGGCAGGCAAGGACCAGT
LOC_Os05g18780
OsAffx.20707.5.S1_at--601--311Chr05:10883145..10883169 (25 bp)
ATACGGCAGGCAAGGACCAGTCCGA
LOC_Os05g18780
OsAffx.20707.5.S1_at--43--9591Chr05:10883115..10883139 (25 bp)
TCATTCTCACCCAGCTCAATAGTAC
LOC_Os05g18780
OsAffx.20707.5.S1_at--101--3751Chr05:10883110..10883134 (25 bp)
CTCACCCAGCTCAATAGTACCAAAG
LOC_Os05g18780
OsAffx.20707.5.S1_at--979--4831Chr05:10883102..10883126 (25 bp)
GCTCAATAGTACCAAAGCTATCAGA
LOC_Os05g18780
OsAffx.20707.5.S1_at--1105--7851Chr05:10882935..10882959 (25 bp)
GGTATTTATGAGCTCTATTCATCTA
LOC_Os05g18780
OsAffx.20707.5.S1_at--348--5911Chr05:10882926..10882950 (25 bp)
GAGCTCTATTCATCTATAGTGAAGT
LOC_Os05g18780
OsAffx.20707.5.S1_at--332--2331Chr05:10881708..10881732 (25 bp)
AAAGTTTGAGTATTACAAGCTGGCT
LOC_Os05g18780
Target Sequence 
GGAGCTCTGCCCGAATAGGTACATGGTGATGGAGGCATTCATCGATACGGCAGGCAAGGACCAGTCCGACCCTCTCATTC
TCACCCAGCTCAATAGTACCAAAGCTATCAGAGACAGCATCCAGATCAACTTTGGGGAGTGTGGCCTAGCAGCTTGTCTT
GGGTCGTTGCAAGGTATTTATGAGCTCTATTCATCTATAGTGAAGTATGTAAATCCGATAACGAAGCTTTGCGTGATCCG
AGTTTCCCGTGAAGATCACCAGAAAGTGTGGGCTGCTATCACCATGGTGAGGAGCATTGGGAAAATCCCAGTTTCATTCA
ATCTGCGGGATGTGAGTGGAAGTATCAGGGCTTGCAAGAAGGCTGCGTTGGAGTGTGAAGAAGCAAAGTTTGAGTATTAC
AAGCTGGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.20707.5.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis