Browse Element(s) Details


OsAffx.21000.1.S1_at

Description gb:XM_354057.1
DB_XREF= gi:35189547
TID=OsAffx.21000.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group).
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g581141/11expressed protein
LOC_Os04g062201/11retrotransposon protein, putative, Ty1-copia subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g58060OsAffx.32320.1.S1_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060OsAffx.24369.1.S2_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060OsAffx.24407.2.S1_s_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060Os.27314.1.S1_at11/111+33908098..33916953hypothetical protein
LOC_Os01g58060OsAffx.24407.1.S1_at9/111+33908098..33916953hypothetical protein
LOC_Os01g58070OsAffx.2355.1.S1_at11/111+33917484..33918509Common central domain of tyrosinase family protein
LOC_Os01g58080Os.4953.2.S1_x_at11/111+33920592..33924187membrane-associated salt-inducible protein, putative, expressed
LOC_Os01g58080Os.4953.1.S1_at11/111+33920592..33924187membrane-associated salt-inducible protein, putative, expressed
LOC_Os01g58100OsAffx.9503.1.S1_at11/111+33928178..33932108Common central domain of tyrosinase family protein
LOC_Os01g58114Os.10123.2.S1_x_at10/111+33936195..33943176expressed protein
LOC_Os01g58114Os.10123.1.S1_at10/111+33936195..33943176expressed protein
LOC_Os01g58114OsAffx.21000.1.S1_at1/111+33936195..33943176expressed protein
LOC_Os01g58130Os.6683.1.S1_at11/111+33945219..33946022expressed protein
LOC_Os01g58140Os.7983.1.S1_at11/111+33952135..33952891expressed protein
LOC_Os01g58150Os.36901.1.S1_at11/111+33956407..33957868expressed protein
LOC_Os01g58160Os.27541.1.A1_at2/111+33960068..33962191hypothetical protein
LOC_Os01g58160OsAffx.1396.1.S1_x_at1/111+33960068..33962191hypothetical protein
LOC_Os01g58170OsAffx.23834.1.S1_at10/111+33965457..33966349hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21000.1.S1_at--220--5851Chr07:28159060..28159084 (25 bp)
GACCATCATGTACATCATCTCGCGA
NONE
OsAffx.21000.1.S1_at--167--711Chr07:28159092..28159116 (25 bp)
ATGATGGATTTCACTCACAGACAGA
NONE
OsAffx.21000.1.S1_at--951--5551Chr07:28159115..28159139 (25 bp)
GAAAGCAAATTCAGCCTCCGATCGA
NONE
OsAffx.21000.1.S1_at--384--3092Chr07:28159182..28159206 (25 bp)
AATACAATATGCCTCCCAAAGCCAA
NONE
OsAffx.21000.1.S1_at--27--4411Chr07:28159202..28159226 (25 bp)
GCCAAAGCATATGCGGCTGCATTCT
NONE
OsAffx.21000.1.S1_at--778--3851Chr07:28160989..28161013 (25 bp)
CTGTACTGTTTGGAGGAGCTCGTCC
NONE
OsAffx.21000.1.S1_at--639--5891Chr07:28161004..28161028 (25 bp)
GAGCTCGTCCAAACAGGGCCACTAG
NONE
OsAffx.21000.1.S1_at--219--4411Chr07:28161021..28161045 (25 bp)
GCCACTAGCTAGTCCAGAGGTCATT
NONE
OsAffx.21000.1.S1_at--108--8531Chr07:28161047..28161071 (25 bp)
TGGAACAATCCATCTGCAGCACGGG
NONE
OsAffx.21000.1.S1_at--330--7356Chr07:28161100..28161124 (25 bp)
GTGCAACTATGCAACTCTCATCCTA
NONE
OsAffx.21000.1.S1_at--214--2171Chr07:28161527..28161551 (25 bp)
ACACGCTCTGTGATTACCAGCTAGT
NONE
Target Sequence 
GACCATCATGTACATCATCTCGCGATCTCTCCATGATGGATTTCACTCACAGACAGAAAGCAAATTCAGCCTCCGATCGA
GCAAAAGCCGCGGCAATGGACGGTGCCTGAAATATAGTACAAAATACAATATGCCTCCCAAAGCCAAAGCATATGCGGCT
GCATTCTGCATTCCTTCCTGCACGCAGAATATGGATCAAAAGCTGTACTGTTTGGAGGAGCTCGTCCAAACAGGGCCACT
AGCTAGTCCAGAGGTCATTCTGGAACAATCCATCTGCAGCACGGGGAAGTATCAGGTGCAATCACCTAATTCAGTGCAAC
TATGCAACTCTCATCCTACACCGTTGGATCGAGAAATTGACGTCCGAGATTCGTCCAGCCACACGTGCCAGTGGGGCCAC
ACGCTCTGTGATTACCAGCTAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21000.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis