Browse Element(s) Details


OsAffx.21927.1.S1_x_at

Description gb:NM_189402.1
DB_XREF= gi:34905887
GEN=P0458E05.20
TID=OsAffx.21927.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) P0458E05.20 (P0458E05.20), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g735141/115-oxoprolinase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g73450Os.11630.1.S1_at11/111+42889671..42893841Uridylate kinase, putative, expressed
LOC_Os01g73460Os.26985.1.S1_at9/111+42894691..42899924PHD finger family protein, putative, expressed
LOC_Os01g73470Os.5947.1.S1_at11/111+42901703..42904665Growth inhibition and differentiation-related protein 88 homolog, putative, expressed
LOC_Os01g73480OsAffx.11840.1.S1_x_at11/111+42906190..42910493acetyltransferase, GNAT family protein
LOC_Os01g73480OsAffx.11840.2.S1_at10/111+42906190..42910493acetyltransferase, GNAT family protein
LOC_Os01g73480OsAffx.26722.2.S1_s_at1/111+42906190..42910493acetyltransferase, GNAT family protein
LOC_Os01g73490Os.31132.1.S1_at11/111+42912020..42912918expressed protein
LOC_Os01g73500Os.15641.1.S1_at11/111+42914150..42917180expressed protein
LOC_Os01g73500Os.52303.1.S1_at7/111+42914150..42917180expressed protein
LOC_Os01g73500Os.52303.1.S1_x_at6/111+42914150..42917180expressed protein
LOC_Os01g73500OsAffx.14389.1.S1_at2/111+42914150..42917180expressed protein
LOC_Os01g73514Os.20353.1.S2_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514Os.20353.1.S1_a_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514Os.20353.1.S3_s_at11/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73514OsAffx.21927.1.S1_x_at1/111+42917729..429248505-oxoprolinase, putative, expressed
LOC_Os01g73530Os.28988.1.S1_a_at11/111+42935890..42939281ABC transporter family protein, expressed
LOC_Os01g73530Os.28988.2.S1_x_at11/111+42935890..42939281ABC transporter family protein, expressed
LOC_Os01g73530Os.28988.1.S1_at11/111+42935890..42939281ABC transporter family protein, expressed
LOC_Os01g73540Os.33788.1.S1_at11/111+42940636..42941470YGGT family protein, putative, expressed
LOC_Os01g73550Os.12130.1.S1_at11/111+42941662..42945189mitochondrial processing peptidase alpha subunit 1,mitochondrial precursor, putative, expressed
LOC_Os01g73560Os.13960.2.S1_x_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73560Os.13960.2.S1_s_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73560Os.13960.1.S1_a_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73560Os.13960.1.S1_at11/111+42945326..42948552Leucine Rich Repeat family protein, expressed
LOC_Os01g73570Os.8280.1.S1_x_at11/111+42948667..42951599vacuolar protein sorting 55 family protein, putative, expressed
LOC_Os01g73570Os.8280.1.S1_at11/111+42948667..42951599vacuolar protein sorting 55 family protein, putative, expressed
LOC_Os01g73570Os.8280.2.S1_x_at9/111+42948667..42951599vacuolar protein sorting 55 family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016787molecular_functionhydrolase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21927.1.S1_x_at--1110--2671Chr01:42925779..42925803 (25 bp)
AAGCTGCGGGCGTGGTGGCATCGGA
NONE
OsAffx.21927.1.S1_x_at--328--8011Chr01:42925757..42925781 (25 bp)
GGAGGTGAAGGTGTGCGACGTCGTC
NONE
OsAffx.21927.1.S1_x_at--917--4071Chr01:42925742..42925766 (25 bp)
CGACGTCGTCGTTTGGGAGGTGAGA
NONE
OsAffx.21927.1.S1_x_at--1133--2911Chr01:42925713..42925737 (25 bp)
AAGGCTTCTTGGAGGCAGAGGCGGA
NONE
OsAffx.21927.1.S1_x_at--670--7651Chr01:42925406..42925674 (25 bp)
GGGATGAGCCACTTCTCTCCGTTGA
NONE
OsAffx.21927.1.S1_x_at--812--2051Chr01:42925397..42925419 (23 bp)
CACTTCTCTCCGTTGACCCGTTGAA
NONE
OsAffx.21927.1.S1_x_at--96--5991Chr01:42925386..42925410 (25 bp)
GTTGACCCGTTGAACTACGACGACA
NONE
OsAffx.21927.1.S1_x_at--750--8451Chr01:42925384..42925408 (25 bp)
TGACCCGTTGAACTACGACGACACC
NONE
OsAffx.21927.1.S1_x_at--195--4211Chr01:42925360..42925384 (25 bp)
CCCCATCGAAGGGATCAGGAAGATC
NONE
OsAffx.21927.1.S1_x_at--443--6171Chr01:42925315..42925339 (25 bp)
GAGGATCATGCGGTCGTCCAAGATT
NONE
OsAffx.21927.1.S1_x_at--1147--592Chr01:42925308..42925332 (25 bp)
ATGCGGTCGTCCAAGATTCCCACGG
NONE
Target Sequence 
AAGCTGCGGGCGTGGTGGCATCGGAGGTGAAGGTGTGCGACGTCGTCGTTTGGGAGGTGAGAAGGCAAGGCTTCTTGGAG
GCAGAGGCGGAAGCGGTGGCTGTGGTAGAGGCGGTTGCGGGGGAAGACGGGGATGAGCCACTTCTCTCCGTTGACCCGTT
GAACTACGACGACACCCCCATCGAAGGGATCAGGAAGATCCTCGAGGAGTTGTCCGGGGAGAGGATCATGCGGTCGTCCA
AGATTCCCACGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21927.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis