Browse Element(s) Details


OsAffx.21983.1.S1_at

Description tigr:9636.m00591
TID=OsAffx.21983.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g0656010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g06490Os.31710.1.S1_at11/118+3670687..3673857pentatricopeptide, putative, expressed
LOC_Os08g06500OsAffx.5723.2.S1_x_at11/118+3674581..3682369pentatricopeptide, putative, expressed
LOC_Os08g06500OsAffx.5723.1.S1_x_at11/118+3674581..3682369pentatricopeptide, putative, expressed
LOC_Os08g06500Os.25378.2.A1_at6/118+3674581..3682369pentatricopeptide, putative, expressed
LOC_Os08g06500OsAffx.7080.1.S1_x_at1/118+3674581..3682369pentatricopeptide, putative, expressed
LOC_Os08g06510Os.25378.1.S1_at11/118+3679713..3681665Zinc finger, C3HC4 type family protein, expressed
LOC_Os08g06520Os.8869.1.S1_at11/118+3684401..3687023expressed protein
LOC_Os08g06520Os.46608.1.A1_x_at11/118+3684401..3687023expressed protein
LOC_Os08g06520Os.46608.1.A1_at11/118+3684401..3687023expressed protein
LOC_Os08g06520Os.46608.1.A1_s_at11/118+3684401..3687023expressed protein
LOC_Os08g06520Os.8869.1.S1_x_at10/118+3684401..3687023expressed protein
LOC_Os08g06530Os.8000.1.S1_at11/118+3687961..3690299Rubredoxin family protein, expressed
LOC_Os08g06540Os.36756.1.S1_at11/118+3691049..3691818expressed protein
LOC_Os08g06550Os.12390.1.S1_at5/118+3691986..3694155Acyl-CoA-binding protein, putative, expressed
LOC_Os08g06560OsAffx.21983.1.S1_at10/118+3696299..3699438hypothetical protein
LOC_Os08g06570NANA8+3701705..3707845retrotransposon protein, putative, unclassified
LOC_Os08g06580Os.28943.1.S1_x_at1/118+3708558..3711635retrotransposon protein, putative, unclassified
LOC_Os08g06590OsAffx.5724.1.S1_x_at11/118+3713914..3714991hypothetical protein
LOC_Os08g06590OsAffx.5724.2.S1_at11/118+3713914..3714991hypothetical protein
LOC_Os08g06590OsAffx.5724.1.S1_at8/118+3713914..3714991hypothetical protein
LOC_Os08g06600Os.36139.1.S1_at11/118+3716022..3719897Nuf2 family protein, expressed
LOC_Os08g06610Os.12047.1.S1_a_at11/118+3720558..3721117Mps one binder kinase activator-like 1A, putative
LOC_Os08g06620OsAffx.16857.1.S1_s_at11/118+3721757..3722500expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.21983.1.S1_at--864--6091Chr08:3698838..3698862 (25 bp)
GAGTCAGCATGGGTCCCGTATGTCA
LOC_Os08g06560
OsAffx.21983.1.S1_at--533--1531Chr08:3698837..3698857 (21 bp)
AGCATGGGTCCCGTATGTCAGCCGA
LOC_Os08g06560
OsAffx.21983.1.S1_at--48--7971Chr08:3698386..3698410 (25 bp)
GGAGACGGTGTCTCGTCCTACCGCC
LOC_Os08g06560
OsAffx.21983.1.S1_at--88--7271Chr08:3698350..3698374 (25 bp)
GTCCATTCCTTCCTCCTTGCTAAGG
LOC_Os08g06560
OsAffx.21983.1.S1_at--852--2951Chr08:3698329..3698353 (25 bp)
AAGGCCTCTGGCTCTGATTTCGTCT
LOC_Os08g06560
OsAffx.21983.1.S1_at--1098--1751Chr08:3698207..3698231 (25 bp)
ACCTCGCCAGCGGATGGTTGAAGAT
LOC_Os08g06560
OsAffx.21983.1.S1_at--55--4571NONE
GCGCGGCGGTATTGTCTTCTAGATC
NONE
OsAffx.21983.1.S1_at--423--8731Chr08:3696471..3696495 (25 bp)
TGTCTTCTAGATCTGGTTTTGAGCT
LOC_Os08g06560
OsAffx.21983.1.S1_at--711--3611Chr08:3696448..3696472 (25 bp)
CTTGATTGTGCTAGCTCTTGTGTCA
LOC_Os08g06560
OsAffx.21983.1.S1_at--155--1591Chr08:3696436..3696460 (25 bp)
AGCTCTTGTGTCAGGCTGGTGATTC
LOC_Os08g06560
OsAffx.21983.1.S1_at--596--4331Chr08:3696384..3696408 (25 bp)
CCAGGTCCAGGGTGATTAATTACAT
LOC_Os08g06560
Target Sequence 
GAGTCAGCATGGGTCCCGTATGTCAGCCGACCCGCGGGTGCGAGGTGGGAGAGAGGGAGGGCGGCCGATGCTGGGGCGGC
GACGGCCAATGCGGGAGAAGGGGAGACGGTGTCTCGTCCTACCGCCACAACGACGCCGTCCATTCCTTCCTCCTTGCTAA
GGCCTCTGGCTCTGATTTCGTCTTCTCCCTTCTCCGCCGCATCCTCTCGTTCTCCCCACCCGCCGACTCCCTCTTCCGCC
AACGCCGTCCACTCCTACCCTCCTCCGCCACATCCTCATAACCTCGCCAGCGGATGGTTGAAGATGAAGTGGCTGGGGTC
GGATGCCCCGCGGTCATCCCGCGCGGCGGTATTGTCTTCTAGATCTGGTTTTGAGCTTGATTGTGCTAGCTCTTGTGTCA
GGCTGGTGATTCCACTGCCGAGGAGCTTGCCACTGCCACCCAGGTCCAGGGTGATTAATTACAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.21983.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis