Browse Element(s) Details


OsAffx.22189.1.S1_at

Description tigr:9629.m01650
TID=OsAffx.22189.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g1656011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g16520Os.37842.1.S1_at11/111+9370534..9374978glutamyl-tRNA synthetase family protein, expressed
LOC_Os01g16530OsAffx.23276.1.S1_at11/111+9375764..9379961Clp protease family protein, expressed
LOC_Os01g16530Os.5307.1.S1_s_at11/111+9375764..9379961Clp protease family protein, expressed
LOC_Os01g16530Os.36108.2.S1_x_at11/111+9375764..9379961Clp protease family protein, expressed
LOC_Os01g16540Os.10190.1.S1_at11/111+9382980..9387394RUB-activating enzyme, putative, expressed
LOC_Os01g16550Os.37994.1.S1_at11/111+9390660..9393390expressed protein
LOC_Os01g16550Os.37994.2.S1_x_at9/111+9390660..9393390expressed protein
LOC_Os01g16550Os.37994.2.S1_at5/111+9390660..9393390expressed protein
LOC_Os01g16560OsAffx.22189.1.S1_at11/111+9399471..9400500hypothetical protein
LOC_Os01g16570OsAffx.22708.3.S1_x_at7/111+9408112..9409131retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16570OsAffx.22708.4.S1_x_at4/111+9408112..9409131retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.1.S1_at11/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.1.S1_x_at11/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.2.S1_x_at5/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.5.S1_x_at5/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16580OsAffx.22708.2.S1_at4/111+9410173..9412781retrotransposon protein, putative, Ty1-copia subclass
LOC_Os01g16590OsAffx.11080.1.S1_at9/111+9416107..9416759hypothetical protein
LOC_Os01g16600Os.35373.1.S1_at11/111+9421334..9425967expressed protein
LOC_Os01g16600Os.35373.2.S1_at10/111+9421334..9425967expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.22189.1.S1_at--213--3371Chr01:9399862..9399886 (25 bp)
CACCGGCGGCTTTCTCGGCGTCGGA
LOC_Os01g16560
OsAffx.22189.1.S1_at--13--9311Chr01:9399672..9399696 (25 bp)
TCCCCGTTGCGTAAACGGCGGCGTG
LOC_Os01g16560
OsAffx.22189.1.S1_at--142--3431Chr01:9399637..9399661 (25 bp)
CAGAGGCTATCTGCTTAGGGAGGAG
LOC_Os01g16560
OsAffx.22189.1.S1_at--643--5351Chr01:9399584..9399608 (25 bp)
GAAGATACTTTGGATAGTACAACAA
LOC_Os01g16560
OsAffx.22189.1.S1_at--138--1171Chr01:9399569..9399593 (25 bp)
AGTACAACAACTGTCGATGCCGCTG
LOC_Os01g16560
OsAffx.22189.1.S1_at--859--8711Chr01:9399558..9399582 (25 bp)
TGTCGATGCCGCTGTAGTTGCACTC
LOC_Os01g16560
OsAffx.22189.1.S1_at--674--4731Chr01:9399548..9399572 (25 bp)
GCTGTAGTTGCACTCCATCTATATT
LOC_Os01g16560
OsAffx.22189.1.S1_at--425--6672Chr04:8965052..8965073 (22 bp)
GTTGCACTCCATCTATATTTGAATT
NONE
OsAffx.22189.1.S1_at--444--6791Chr01:9399515..9399539 (25 bp)
GTTAGTAGAAGTACTGTTCGCTCTA
LOC_Os01g16560
OsAffx.22189.1.S1_at--1048--2831Chr01:9399507..9399531 (25 bp)
AAGTACTGTTCGCTCTAGTGTTCTA
LOC_Os01g16560
OsAffx.22189.1.S1_at--9--8811Chr01:9399501..9399525 (25 bp)
TGTTCGCTCTAGTGTTCTATGTGGT
LOC_Os01g16560
Target Sequence 
CACCGGCGGCTTTCTCGGCGTCGGAGGCGACGGAGGCCGCGGCGGCGACGGCGGCCCAGGAGGCAGCGGAGGCCGCGGCG
GCGACGGAGGTCAAGGCGGACCTGGCCAACGGGGCGGGGACGGCGGGCCCGGCGGGGCAGGCGGGCCCGGCGGGCACGGC
GGCGACGGTGGGGACGGCGGGCCGAGTGGTTCCCCGTTGCGTAAACGGCGGCGTGGTGGGCGGAGCAGAGGCTATCTGCT
TAGGGAGGAGGAGGAGGAGGAGGAGCTTGATCAGATATGAAGATACTTTGGATAGTACAACAACTGTCGATGCCGCTGTA
GTTGCACTCCATCTATATTTGAATTTAGTTAGTAGAAGTACTGTTCGCTCTAGTGTTCTATGTGGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.22189.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis