Browse Element(s) Details


OsAffx.23091.2.S1_x_at

Description tigr:9629.m00185
TID=OsAffx.23091.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Protein kinase domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g0273011/11TAK14, putative, expressed
LOC_Os01g027601/11receptor-like kinase, putative, expressed
LOC_Os01g028301/11receptor-like kinase ARK1AS, putative, expressed
LOC_Os02g537201/11Protein kinase domain containing protein, expressed
LOC_Os01g028001/11TAK14, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g02680Os.33796.1.S1_x_at10/111+908537..911048TAK33, putative, expressed
LOC_Os01g02680OsAffx.26617.2.S1_x_at4/111+908537..911048TAK33, putative, expressed
LOC_Os01g02680Os.45516.2.S1_x_at2/111+908537..911048TAK33, putative, expressed
LOC_Os01g02690OsAffx.23090.4.S1_x_at11/111+912441..916476rust resistance kinase Lr10, putative
LOC_Os01g02690OsAffx.23090.1.S1_x_at2/111+912441..916476rust resistance kinase Lr10, putative
LOC_Os01g02690OsAffx.23090.2.S1_x_at1/111+912441..916476rust resistance kinase Lr10, putative
LOC_Os01g02700Os.778.2.S1_x_at11/111+917796..920432TAK14, putative, expressed
LOC_Os01g02700Os.778.1.S1_at11/111+917796..920432TAK14, putative, expressed
LOC_Os01g02710OsAffx.1916.1.S1_s_at11/111+921253..921977LRk-type protein, putative
LOC_Os01g02720Os.780.1.S1_a_at11/111+926686..931260Elongation factor Tu C-terminal domain containing protein, expressed
LOC_Os01g02730OsAffx.23091.2.S1_x_at11/111+932376..935169TAK14, putative, expressed
LOC_Os01g02730Os.1977.3.S1_x_at1/111+932376..935169TAK14, putative, expressed
LOC_Os01g02740NANA1+936807..949253retrotransposon protein, putative, unclassified
LOC_Os01g02750OsAffx.23090.3.S1_x_at5/111+950877..953441receptor kinase LRK14, putative
LOC_Os01g02750OsAffx.23090.2.S1_x_at4/111+950877..953441receptor kinase LRK14, putative
LOC_Os01g02750OsAffx.23090.9.S1_x_at3/111+950877..953441receptor kinase LRK14, putative
LOC_Os01g02750OsAffx.23090.4.S1_x_at2/111+950877..953441receptor kinase LRK14, putative
LOC_Os01g02750OsAffx.8676.1.S1_at1/111+950877..953441receptor kinase LRK14, putative
LOC_Os01g02750OsAffx.23090.1.S1_x_at1/111+950877..953441receptor kinase LRK14, putative
LOC_Os01g02760Os.35772.3.S1_x_at3/111+954709..957428receptor-like kinase, putative, expressed
LOC_Os01g02760OsAffx.23091.2.S1_x_at1/111+954709..957428receptor-like kinase, putative, expressed
LOC_Os01g02770Os.47312.1.A1_at11/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770Os.47312.1.A1_x_at11/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770OsAffx.23090.2.S1_x_at7/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770OsAffx.23090.3.S1_x_at6/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770OsAffx.23090.9.S1_x_at6/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770OsAffx.23090.1.S1_x_at1/111+958301..961953YRK1, putative, expressed
LOC_Os01g02770OsAffx.23090.4.S1_x_at1/111+958301..961953YRK1, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006071biological_processglycerol metabolism
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009621biological_processresponse to pathogenic fungi
GO:0009887biological_processorgan morphogenesis
GO:0009965biological_processleaf morphogenesis
GO:0016049biological_processcell growth
GO:0030155biological_processregulation of cell adhesion
GO:0042831biological_processdefense response to pathogenic fungi
GO:0051301biological_processcell division
GO:0005739cellular_componentmitochondrion
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005524molecular_functionATP binding
GO:0008889molecular_functionglycerophosphodiester phosphodiesterase activity
GO:0016301molecular_functionkinase activity
GO:0019199molecular_functiontransmembrane receptor protein kinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23091.2.S1_x_at--553--3771Chr01:932814..932838 (25 bp)
CTCTCGGAGCTTTGGTACCATATCA
LOC_Os01g02730
OsAffx.23091.2.S1_x_at--70--1571Chr01:932771..932795 (25 bp)
AGCTTTGGGATGCTGCTACTAGAAA
LOC_Os01g02730
OsAffx.23091.2.S1_x_at--202--2851Chr01:932703..932727 (25 bp)
AAGTCAGGCATACTATCCATCCCGG
LOC_Os01g02730
OsAffx.23091.2.S1_x_at--562--4331Chr01:932687..932711 (25 bp)
CCATCCCGGGTGTACAAGCAGTTGA
LOC_Os01g02730
OsAffx.23091.2.S1_x_at--986--5671Chr01:932636..932660 (25 bp)
GACATTGTCGACATGCATGAGCTGG
LOC_Os01g02730
OsAffx.23091.2.S1_x_at--390--6152Chr02:32883238..32883306 (25 bp)
GAGGTCATCTGATCGACCGACGATG
LOC_Os02g53720
OsAffx.23091.2.S1_x_at--702--7531Chr01:932521..932545 (25 bp)
GTGGCAGCGATGATCTCCAAGTTCC
LOC_Os01g02730
OsAffx.23091.2.S1_x_at--768--9574Chr01:932485..932509 (25 bp)
TCTTCTGTGATGATGAGCAACCCCT
LOC_Os01g02730
OsAffx.23091.2.S1_x_at--235--1431Chr01:932470..932494 (25 bp)
AGCAACCCCTTGGAGTAGAGCCTTA
LOC_Os01g02730
OsAffx.23091.2.S1_x_at--708--10031Chr01:932455..932479 (25 bp)
TAGAGCCTTACCATCTGTCATCTGA
LOC_Os01g02730
OsAffx.23091.2.S1_x_at--483--6411Chr01:932432..932456 (25 bp)
GATCTGACTGCAATCTCTGAAGCTG
LOC_Os01g02730
Target Sequence 
CTCTCGGAGCTTTGGTACCATATCAAGCAAATCTGATGTGTATAGCTTTGGGATGCTGCTACTAGAAATGGCCGGAGGAA
GAAGAAATGCAGATCCGAATGCAGCAAACTCAAGTCAGGCATACTATCCATCCCGGGTGTACAAGCAGTTGACTCGACGA
GAAACATGTGAGATCTCTGACATTGTCGACATGCATGAGCTGGAGAAGGAGCTTTGCGTTGTTGGATTACGGTGCATTCA
GATGAGGTCATCTGATCGACCGACGATGAGCGAGGTGATAGAGATGCTTGAAGGTGGCAGCGATGATCTCCAAGTTCCTC
CCAAGCCATTCTTCTGTGATGATGAGCAACCCCTTGGAGTAGAGCCTTACCATCTGTCATCTGATCTGACTGCAATCTCT
GAAGCTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23091.2.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis