Browse Element(s) Details


OsAffx.23612.1.S1_at

Description tigr:9629.m03888
TID=OsAffx.23612.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g4072011/11pentatricopeptide, putative
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g40640Os.38077.1.S1_at11/111+23306806..23310002S1 RNA binding domain PF|00575 containing protein, putative, expressed
LOC_Os01g40640Os.38077.2.S1_x_at9/111+23306806..23310002S1 RNA binding domain PF|00575 containing protein, putative, expressed
LOC_Os01g40640Os.38077.2.S1_at1/111+23306806..23310002S1 RNA binding domain PF|00575 containing protein, putative, expressed
LOC_Os01g40650Os.14549.1.S1_at11/111+23310240..23312635expressed protein
LOC_Os01g40650Os.7579.1.S1_at1/111+23310240..23312635expressed protein
LOC_Os01g40660Os.45941.1.S1_at11/111+23313596..23314735embryo-abundant protein, putative, expressed
LOC_Os01g40670Os.8369.1.S1_at11/111+23315077..23318787single myb histone 1, putative, expressed
LOC_Os01g40680OsAffx.23610.1.S1_at11/111+23319400..23321019pentatricopeptide, putative
LOC_Os01g40690Os.11068.4.S1_x_at11/111+23322899..23325189holocarboxylase synthetase, putative, expressed
LOC_Os01g40690Os.11068.1.S1_a_at11/111+23322899..23325189holocarboxylase synthetase, putative, expressed
LOC_Os01g40700Os.7488.1.S1_s_at11/111+23326953..23329280expressed protein
LOC_Os01g40700Os.41402.1.S1_x_at11/111+23326953..23329280expressed protein
LOC_Os01g40710Os.15183.1.S1_at11/111+23330543..23331858expressed protein
LOC_Os01g40720OsAffx.23612.1.S1_at11/111+23332601..23335789pentatricopeptide, putative
LOC_Os01g40730Os.41397.1.S1_at7/111+23340272..23340787hypothetical protein
LOC_Os01g40730Os.41397.1.S1_x_at3/111+23340272..23340787hypothetical protein
LOC_Os01g40730Os.27284.1.S1_at1/111+23340272..23340787hypothetical protein
LOC_Os01g40740Os.41397.1.S1_x_at3/111+23342355..23343966hypothetical protein
LOC_Os01g40750Os.27284.1.S1_at11/111+23349926..23352964expressed protein
LOC_Os01g40750Os.41397.1.S1_x_at8/111+23349926..23352964expressed protein
LOC_Os01g40760Os.51799.1.S1_at11/111+23357121..23357848expressed protein
LOC_Os01g40770OsAffx.19950.1.S1_at1/111+23359896..23361926Transposable element protein, putative, Retrotrans_gag

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23612.1.S1_at--463--7651Chr01:23333108..23333132 (25 bp)
GGAATTAGAACCTCAAAATCCTGTA
LOC_Os01g40720
OsAffx.23612.1.S1_at--632--6731Chr01:23333077..23333101 (25 bp)
GTTCTTTCATCTAAGTTTCATGCAG
LOC_Os01g40720
OsAffx.23612.1.S1_at--86--8051Chr01:23332954..23332978 (25 bp)
GGAGTTCATACCTTCATTGCTGGTG
LOC_Os01g40720
OsAffx.23612.1.S1_at--135--7371Chr01:23332932..23332956 (25 bp)
GTGACAGGTCACATCCAAACACCAA
LOC_Os01g40720
OsAffx.23612.1.S1_at--508--5971Chr01:23332897..23332921 (25 bp)
GAGAAGCTCAACTTTTTGATTCAGA
LOC_Os01g40720
OsAffx.23612.1.S1_at--252--651Chr01:23332863..23332887 (25 bp)
ATGCAGGTTATGTTCCACTGACAGA
LOC_Os01g40720
OsAffx.23612.1.S1_at--290--7911Chr01:23332769..23332793 (25 bp)
GGTTGCTTTTGTTCTGACTCGTTCC
LOC_Os01g40720
OsAffx.23612.1.S1_at--478--3751Chr01:23332742..23332766 (25 bp)
CTCAGGTGGCCCCATAAGGATCATG
LOC_Os01g40720
OsAffx.23612.1.S1_at--28--8051Chr01:23332699..23332723 (25 bp)
GGAGATTGCCATACAGCTTTCAGAT
LOC_Os01g40720
OsAffx.23612.1.S1_at--1057--2071Chr01:23332674..23332698 (25 bp)
ACATTTCTCAGATTGTTGGTCGGCA
LOC_Os01g40720
OsAffx.23612.1.S1_at--448--2891Chr01:23332640..23332664 (25 bp)
AAGGGATTCAATCCGATTTCATCAT
LOC_Os01g40720
Target Sequence 
GGAATTAGAACCTCAAAATCCTGTAAATTATGTTCTTTCATCTAAGTTTCATGCAGCAATAGGAAGGTGGGAAGACACAG
CCAAAGCCCGGGCTGCAATGAAGGGAGCAGCAGTGAAAAAAGAGGCCGGTCGCAGTTGGGTAACCTTAACTGATGGAGTT
CATACCTTCATTGCTGGTGACAGGTCACATCCAAACACCAAAGAAATCTATGAGAAGCTCAACTTTTTGATTCAGAAGAT
AAGGAATGCAGGTTATGTTCCACTGACAGAATATGTTTTACATGATCTTGAAGAAGAGAACAAAGAAGAACTGCTAAGAT
ATCACAGTGAAAAGCTTGCGGTTGCTTTTGTTCTGACTCGTTCCTCCTCAGGTGGCCCCATAAGGATCATGAAGAACCTT
CGGGTTTGCGGAGATTGCCATACAGCTTTCAGATACATTTCTCAGATTGTTGGTCGGCAAATCATTTTAAGGGATTCAAT
CCGATTTCATCAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23612.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis