Browse Element(s) Details


OsAffx.23970.1.S1_at

Description tigr:9629.m06774
TID=OsAffx.23970.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os01g6825011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os01g68200OsAffx.23969.1.S1_at11/111+39965630..39968123expressed protein
LOC_Os01g68210OsAffx.11786.1.S1_at11/111+39970541..39971692hypothetical protein
LOC_Os01g68220Os.35344.18.S1_x_at10/111+39974332..39980505transposon protein, putative, Mutator sub-class
LOC_Os01g68220Os.35344.3.S1_x_at9/111+39974332..39980505transposon protein, putative, Mutator sub-class
LOC_Os01g68220OsAffx.22940.5.S1_x_at3/111+39974332..39980505transposon protein, putative, Mutator sub-class
LOC_Os01g68230Os.47795.1.S1_at11/111+39981483..39984634expressed protein
LOC_Os01g68240OsAffx.2435.1.S1_at10/111+39984792..39987482hypothetical protein
LOC_Os01g68240Os.52822.1.S1_at10/111+39984792..39987482hypothetical protein
LOC_Os01g68250OsAffx.23970.1.S1_at11/111+39989866..39992459expressed protein
LOC_Os01g68260Os.42786.1.A1_at9/111+39993504..39997516expressed protein
LOC_Os01g68270Os.33773.1.S1_at11/111+39997588..39999102expressed protein
LOC_Os01g68279NANA1+40005305..40006009NA
LOC_Os01g68290Os.42784.1.S1_at8/111+40006399..40006953expressed protein
LOC_Os01g68300Os.11975.2.A1_at11/111+40009684..40010287expressed protein
LOC_Os01g68310Os.11975.1.S1_at11/111+40011433..40014161expressed protein
LOC_Os01g68320Os.12967.1.A1_a_at11/111+40015110..40020008ATP-dependent RNA helicase DBP2, putative, expressed
LOC_Os01g68320Os.12967.4.S1_x_at11/111+40015110..40020008ATP-dependent RNA helicase DBP2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.23970.1.S1_at--764--7591Chr01:39991862..39991886 (25 bp)
GGGCATGCACTACTCTTTATTGGAC
LOC_Os01g68250
OsAffx.23970.1.S1_at--1074--10851Chr01:39991881..39991905 (25 bp)
TTGGACCCATTGACTCAAGTATCTG
LOC_Os01g68250
OsAffx.23970.1.S1_at--958--9451Chr01:39991902..39991926 (25 bp)
TCTGAGTTCCTTTGGTGGCACAAGC
LOC_Os01g68250
OsAffx.23970.1.S1_at--173--4171Chr01:39991926..39991950 (25 bp)
CGCCTCATTCACCTCAAAGACATAA
LOC_Os01g68250
OsAffx.23970.1.S1_at--1146--8151Chr01:39991976..39992000 (25 bp)
GGAAAACATCCCAACTGGTAACAAT
LOC_Os01g68250
OsAffx.23970.1.S1_at--81--10331Chr01:39992041..39992065 (25 bp)
TTTCACTGGGCATTCCTAAGAGGAG
LOC_Os01g68250
OsAffx.23970.1.S1_at--391--7671Chr01:39992069..39992093 (25 bp)
GGGATTAGTACATACCACCGAGGAA
LOC_Os01g68250
OsAffx.23970.1.S1_at--24--2471Chr01:39992105..39992129 (25 bp)
AACAACAGCGGCAAGTCAAGGTACT
LOC_Os01g68250
OsAffx.23970.1.S1_at--169--2431Chr01:39992151..39992175 (25 bp)
AAAACTGCAGTTGGCCAGGATACCA
LOC_Os01g68250
OsAffx.23970.1.S1_at--675--8171Chr01:39992257..39992281 (25 bp)
GGAACTCAATAGAACACCTGGACAG
LOC_Os01g68250
OsAffx.23970.1.S1_at--155--2211Chr01:39992381..39992405 (25 bp)
ACAAGCATTCTCTAAGTTCTTTGGA
LOC_Os01g68250
Target Sequence 
GGGCATGCACTACTCTTTATTGGACCCATTGACTCAAGTATCTGAGTTCCTTTGGTGGCACAAGCGCCTCATTCACCTCA
AAGACATAAATCCAGAAAAGTTTCAAAGAATCATGGAAAACATCCCAACTGGTAACAATTGGATGAGTCGGGCGGTGGAG
AATAAGTACATAAGAAAGGTTTCACTGGGCATTCCTAAGAGGAGAAAGGGATTAGTACATACCACCGAGGAAGTGAAGCC
TGAAACAACAGCGGCAAGTCAAGGTACTGGTATTGAGGGAGTAAAACCAAAAACTGCAGTTGGCCAGGATACCAATATTG
AGGACCCAAAACCTGAAACTGCAACACCAAAATGCAAGTACTCGGAAGATTCATGGGGGCAGAGTTTGTTGTGTAGGAAC
TCAATAGAACACCTGGACAGATGGGCAGCATTGAGAAGGATCAAAAAAAAGAAATCAGGTGGCAAGATAAGAACGGTAAA
AGTTCAATTCGAGGAAATGGGCAGATGCTATATCATAATACAAGCATTCTCTAAGTTCTTTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.23970.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis