Browse Element(s) Details


OsAffx.2493.1.S1_at

Description tigr:9630.m00273
TID=OsAffx.2493.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=beta-amylase (EC 3.2.1.2) - Arabidopsis thaliana
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os02g0369011/11Glycosyl hydrolase family 14 protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os02g03650OsAffx.24085.1.S1_at10/112+1518563..1523179expressed protein
LOC_Os02g03650OsAffx.31040.1.S1_at5/112+1518563..1523179expressed protein
LOC_Os02g03650OsAffx.26303.1.S1_at1/112+1518563..1523179expressed protein
LOC_Os02g03650OsAffx.4302.1.S1_at1/112+1518563..1523179expressed protein
LOC_Os02g03660OsAffx.24086.1.S1_at11/112+1524951..1526174F-box domain containing protein
LOC_Os02g03670Os.14493.1.S1_at11/112+1531654..1535776expressed protein
LOC_Os02g03680OsAffx.24087.1.S1_at11/112+1537788..1538173hypothetical protein
LOC_Os02g03690Os.49427.1.S1_x_at11/112+1539488..1548149Glycosyl hydrolase family 14 protein, expressed
LOC_Os02g03690Os.49427.1.S1_at11/112+1539488..1548149Glycosyl hydrolase family 14 protein, expressed
LOC_Os02g03690OsAffx.2493.1.S1_at11/112+1539488..1548149Glycosyl hydrolase family 14 protein, expressed
LOC_Os02g03700Os.28399.1.S1_at11/112+1550813..1553359expressed protein
LOC_Os02g03700Os.28399.1.S2_at11/112+1550813..1553359expressed protein
LOC_Os02g03700Os.28399.1.S3_at11/112+1550813..1553359expressed protein
LOC_Os02g03710Os.56074.1.S1_at11/112+1558479..1559143expressed protein
LOC_Os02g03720Os.27754.1.S1_at11/112+1560693..1563282expressed protein
LOC_Os02g03730Os.10628.1.S1_at10/112+1563426..1565446SWIB/MDM2 domain containing protein, expressed
LOC_Os02g03740Os.10679.1.S1_at11/112+1566119..1569511Glutamine amidotransferase subunit pdxT, putative, expressed
LOC_Os02g03750Os.54804.1.S1_at11/112+1570152..1574900Polygalacturonase family protein, expressed
LOC_Os02g03750Os.46647.1.S1_at1/112+1570152..1574900Polygalacturonase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016161molecular_functionbeta-amylase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.2493.1.S1_at--793--2351Chr02:1546685..1546709 (25 bp)
AAACCGTCCTTCATATAACCATGCG
LOC_Os02g03690
OsAffx.2493.1.S1_at--10--2651Chr02:1546701..1546725 (25 bp)
AACCATGCGGTCTATCCAAGACTTG
LOC_Os02g03690
OsAffx.2493.1.S1_at--1053--6271Chr02:1546725..1546749 (25 bp)
GATGTAGTCTTAGCATTCTATTTAA
LOC_Os02g03690
OsAffx.2493.1.S1_at--124--6611Chr02:1546759..1546783 (25 bp)
GATTGTTAATTCTTCCATCCGCATT
LOC_Os02g03690
OsAffx.2493.1.S1_at--858--10551Chr02:1546768..1546792 (25 bp)
TTCTTCCATCCGCATTGTGAATGAA
LOC_Os02g03690
OsAffx.2493.1.S1_at--126--6611Chr02:1546838..1546862 (25 bp)
GATTGTTTTTGCATCTTCCATGATA
LOC_Os02g03690
OsAffx.2493.1.S1_at--182--10691Chr02:1546853..1546877 (25 bp)
TTCCATGATATTACCCCGCAAAGGG
LOC_Os02g03690
OsAffx.2493.1.S1_at--952--5111Chr02:1546870..1546894 (25 bp)
GCAAAGGGTATCTCTCCGCTCTTCG
LOC_Os02g03690
OsAffx.2493.1.S1_at--73--4011Chr02:1546893..1546917 (25 bp)
CGTCCCTTCCTGTGGAGATGCTGAA
LOC_Os02g03690
OsAffx.2493.1.S1_at--528--4731Chr02:1546912..1546936 (25 bp)
GCTGAATTCGTAACATAACCGGGTA
LOC_Os02g03690
OsAffx.2493.1.S1_at--51--3011Chr02:1547212..1547236 (25 bp)
AATGACGTGCTGTACATTGTATACA
LOC_Os02g03690
Target Sequence 
AAACCGTCCTTCATATAACCATGCGGTCTATCCAAGACTTGATGTAGTCTTAGCATTCTATTTAATTTGAGCTAGATTGT
TAATTCTTCCATCCGCATTGTGAATGAAGATAAACTGCGTGTAGAAAAATGCAAACTAATTGCCTTTAACATAGATTGTT
TTTGCATCTTCCATGATATTACCCCGCAAAGGGTATCTCTCCGCTCTTCGTCCCTTCCTGTGGAGATGCTGAATTCGTAA
CATAACCGGGTAAAAATGATTTTATTTACAGGGGAGGCTACCCAGATTGTGGAAGGTTGAATTCCCTAGTTGCATTATAT
GCACATAGGTTTTGAAACAAGATTAAAGAAAGGAGCTTGGTTTGGACCCCAGAAACCGTCGATGCCCGCGGCGAAATCTG
CTGCGCGATTGTTGTAAAGCTTCTGTTGTGGGTTTTGGAGGTGGTAAGTACGGCTCAAGGCAGGATAATAATAGCTTAGC
AACTCTTTTTTTTTTCCGTGGAATGGTATGAATTTAACATCAGAGAAAATGACGTGCTGTACATTGTATACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.2493.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis