Browse Element(s) Details


OsAffx.25168.2.S1_s_at

Description tigr:9631.m02048
TID=OsAffx.25168.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2062011/11hypothetical protein
LOC_Os02g3810011/11hypothetical protein
LOC_Os11g145105/11transposon protein, putative, Mutator sub-class
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g20550Os.33131.1.A1_at11/113+11629657..11630977WRKY DNA binding domain containing protein, expressed
LOC_Os03g20560Os.23243.2.S1_at11/113+11631798..11632749lipoate-protein ligase, putative, expressed
LOC_Os03g20570Os.23243.1.A1_a_at11/113+11632832..11635444Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
LOC_Os03g20570OsAffx.28912.2.S1_at6/113+11632832..11635444Cytidine and deoxycytidylate deaminase zinc-binding region family protein, expressed
LOC_Os03g20580OsAffx.3283.1.S1_at11/113+11639233..11643090expressed protein
LOC_Os03g20580Os.57428.1.S1_x_at11/113+11639233..11643090expressed protein
LOC_Os03g20590OsAffx.25167.1.S1_at11/113+11645158..11646130hypothetical protein
LOC_Os03g20590OsAffx.6152.1.A1_at1/113+11645158..11646130hypothetical protein
LOC_Os03g20600Os.51506.1.S1_at11/113+11646358..11646954expressed protein
LOC_Os03g20610OsAffx.12952.1.S1_at11/113+11649114..11649392hypothetical protein
LOC_Os03g20620OsAffx.25168.2.S1_s_at11/113+11650429..11650889hypothetical protein
LOC_Os03g20620OsAffx.25168.2.S1_x_at11/113+11650429..11650889hypothetical protein
LOC_Os03g20620OsAffx.25168.1.S1_at2/113+11650429..11650889hypothetical protein
LOC_Os03g20630OsAffx.12953.1.S1_at11/113+11651613..1165631314 kDa zinc-binding protein, putative, expressed
LOC_Os03g20630Os.10655.1.S1_at11/113+11651613..1165631314 kDa zinc-binding protein, putative, expressed
LOC_Os03g20630Os.57481.1.S1_x_at8/113+11651613..1165631314 kDa zinc-binding protein, putative, expressed
LOC_Os03g20640Os.24684.1.S1_at10/113+11656723..11658993expressed protein
LOC_Os03g20650NANA3+11662277..11663168bZIP transcription factor family protein, expressed
LOC_Os03g20660Os.47130.4.A1_x_at3/113+11665786..11666109retrotransposon protein, putative, unclassified
LOC_Os03g20670Os.22300.1.S1_at11/113+11672438..11675979phagocytosis and cell motility protein ELMO1, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25168.2.S1_s_at--64--8174Chr03:11650440..11650464 (25 bp)
GGAAGACGACACTTGCGAGAACAAG
LOC_Os03g20620
OsAffx.25168.2.S1_s_at--40--5794Chr03:11650444..11650468 (25 bp)
GACGACACTTGCGAGAACAAGGATT
LOC_Os03g20620
OsAffx.25168.2.S1_s_at--63--8172Chr03:11650572..11650596 (25 bp)
GGAAAATGGCGCTTGCGAGAACAAG
LOC_Os03g20620
OsAffx.25168.2.S1_s_at--435--8392Chr03:11650579..11650603 (25 bp)
GGCGCTTGCGAGAACAAGGATTGTC
LOC_Os03g20620
OsAffx.25168.2.S1_s_at--287--9132Chr03:11650611..11650635 (25 bp)
TGCTGGGAGAAAGGCATCAGCCGTT
LOC_Os03g20620
OsAffx.25168.2.S1_s_at--67--2932Chr03:11650621..11650645 (25 bp)
AAGGCATCAGCCGTTGAGGAAGACA
LOC_Os03g20620
OsAffx.25168.2.S1_s_at--888--392Chr03:11650626..11650650 (25 bp)
ATCAGCCGTTGAGGAAGACAACGCT
LOC_Os03g20620
OsAffx.25168.2.S1_s_at--745--5612Chr03:11650642..11650666 (25 bp)
GACAACGCTTGCGAGAACAAGGAGA
LOC_Os03g20620
OsAffx.25168.2.S1_s_at--1157--7293Chr03:11650827..11650851 (25 bp)
GTGCTCGACCTCGATGCTCGTTGGC
LOC_Os03g20620
OsAffx.25168.2.S1_s_at--712--9373Chr03:11650831..11650855 (25 bp)
TCGACCTCGATGCTCGTTGGCTGGT
LOC_Os03g20620
OsAffx.25168.2.S1_s_at--199--4293Chr03:11650835..11650859 (25 bp)
CCTCGATGCTCGTTGGCTGGTTGGC
LOC_Os03g20620
Target Sequence 
GGAAGACGACACTTGCGAGAACAAGGATTTCCGTGTCGGTGCTAGGAGAAAGGCGACAACCGTTGGGGAAAATGGCGCTT
GCGAGAACAAGGATTGTCGCGTCGGTGCTGGGAGAAAGGCATCAGCCGTTGAGGAAGACAACGCTTGCGAGAACAAGGAG
AAGAGGAGGAAGATGATGCTTGGGGTCGTGGTCATTGCTACCGTGGATGGCGAGGACGTGCTCGACCTCGATGCTCGTTG
GCTGGTTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25168.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis