Browse Element(s) Details


OsAffx.25260.1.S1_at

Description tigr:9631.m02759
TID=OsAffx.25260.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g2792011/11hypothetical protein
LOC_Os12g223001/11transposon protein, putative, unclassified
LOC_Os10g104501/11retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g253001/11retrotransposon protein, putative, Ty3-gypsy subclass
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g27870NANA3+15987489..15993974transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os03g27880Os.54775.1.S1_at11/113+15995255..15997501pentatricopeptide, putative
LOC_Os03g27890OsAffx.13085.1.S1_at10/113+15998452..16000607hypothetical protein
LOC_Os03g27900OsAffx.13086.1.S1_at11/113+16003951..16004744ZIM motif family protein, expressed
LOC_Os03g27910OsAffx.30226.2.S1_s_at9/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.24587.1.S1_x_at3/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.30226.2.S1_x_at3/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.30226.4.S1_x_at3/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.442.1.S1_x_at3/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.30226.1.S1_x_at2/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.442.1.S1_at1/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.30226.1.S1_at1/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27910OsAffx.19052.1.S1_at1/113+16005467..16010909retrotransposon protein, putative, Ty1-copia subclass
LOC_Os03g27920OsAffx.25260.1.S1_at11/113+16011891..16013230hypothetical protein
LOC_Os03g27930Os.49727.1.S2_at11/113+16017774..16024300WW domain-containing protein, putative, expressed
LOC_Os03g27930Os.49727.1.S1_at10/113+16017774..16024300WW domain-containing protein, putative, expressed
LOC_Os03g27940OsAffx.25261.1.S1_x_at11/113+16027710..16028123hypothetical protein
LOC_Os03g27950Os.26987.1.A1_at11/113+16030057..16037087Ser/Thr protein phosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25260.1.S1_at--562--8231Chr03:16013092..16013116 (25 bp)
GGCAACGTCCAAGCGGAGGTGACTA
LOC_Os03g27920
OsAffx.25260.1.S1_at--934--1871Chr03:16013088..16013112 (25 bp)
ACGTCCAAGCGGAGGTGACTACGGC
LOC_Os03g27920
OsAffx.25260.1.S1_at--1152--6851Chr03:16013037..16013061 (25 bp)
GTCTTGTTGTTCTTCCCGAACTCCG
LOC_Os03g27920
OsAffx.25260.1.S1_at--912--8831Chr03:16012866..16013033 (25 bp)
TGATCTCCCCCATAGCGGCGAAGAA
LOC_Os03g27920
OsAffx.25260.1.S1_at--891--9691Chr03:16012043..16012067 (25 bp)
TCAAAGAACAGAGAATGCATCGATT
LOC_Os03g27920
OsAffx.25260.1.S1_at--459--9051Chr03:16012028..16012052 (25 bp)
TGCATCGATTGCGAAGGCATTGGCT
LOC_Os03g27920
OsAffx.25260.1.S1_at--832--73Chr08:26942629..26942651 (23 bp)
ATTGCGAAGGCATTGGCTGGAGTCT
NONE
OsAffx.25260.1.S1_at--99--6177Chr08:25003824..25003848 (25 bp)
GATGGATCGGACAGAAGACAGCCGA
NONE
OsAffx.25260.1.S1_at--968--56320Chr12:17488659..17488683 (25 bp)
GACAGCCGATAGAGGTGATGCAGCC
NONE
OsAffx.25260.1.S1_at--100--8876Chr03:19768489..19768568 (25 bp)
TGATGCAGCCGATTCCGATGACGAT
NONE
OsAffx.25260.1.S1_at--722--5772Chr09:1417888..1417912 (25 bp)
GACGATGGTTTCAAGGATGTTTCTA
NONE
Target Sequence 
GGCAACGTCCAAGCGGAGGTGACTACGGCGGCGGCTGCGGGCGCAGCGCACGGGGGTCTTGTTGTTCTTCCCGAACTCCG
GCGTGATCTCCCCCATAGCGGCGAAGAAGCCGTCGGTGATGGTGAAGAAGGAGTTGGAGCGGAGGTCGAGGGCGCGGAGG
CCGCCGAGCAGCTACGGCAGCACGGGGAGGTCATCGCGGAGGGCATTGAAGCTGAGGTCGAGTTCGGAGAGGGACGCGAG
CATGCTGAGGTCGGCGCCGACGAGGTGGCCGGCGGATTTGGTAAAGAGATTGATTCAAAGAACAGAGAATGCATCGATTG
CGAAGGCATTGGCTGGAGTCTGCATCGGCTGAGATGGATCGGACAGAAGACAGCCGATAGAGGTGATGCAGCCGATTCCG
ATGACGATGGTTTCAAGGATGTTTCTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25260.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis