Browse Element(s) Details


OsAffx.25330.1.S1_at

Description tigr:9631.m03129
TID=OsAffx.25330.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os03g318109/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os03g31760OsAffx.22964.1.S1_at11/113+18121362..18126203expressed protein
LOC_Os03g31760Os.10698.1.S1_s_at11/113+18121362..18126203expressed protein
LOC_Os03g31770NANA3+18130048..18130290retrotransposon protein, putative, unclassified
LOC_Os03g31780OsAffx.13147.1.S1_s_at11/113+18132080..18132936hypothetical protein
LOC_Os03g31780OsAffx.13147.1.S1_at11/113+18132080..18132936hypothetical protein
LOC_Os03g31790OsAffx.13148.1.S1_at11/113+18138132..18138422hypothetical protein
LOC_Os03g31800OsAffx.29316.1.S1_x_at1/113+18143680..18146820hypothetical protein
LOC_Os03g31800OsAffx.6261.1.S1_x_at1/113+18143680..18146820hypothetical protein
LOC_Os03g31800Os.27691.2.S1_at1/113+18143680..18146820hypothetical protein
LOC_Os03g31800Os.7329.1.S1_s_at1/113+18143680..18146820hypothetical protein
LOC_Os03g31810OsAffx.25330.1.S1_at9/113+18151103..18152794hypothetical protein
LOC_Os03g31810OsAffx.16709.1.S1_at3/113+18151103..18152794hypothetical protein
LOC_Os03g31810OsAffx.8676.1.S1_at3/113+18151103..18152794hypothetical protein
LOC_Os03g31810OsAffx.23566.1.S1_at1/113+18151103..18152794hypothetical protein
LOC_Os03g31839Os.12101.2.A1_a_at11/113+18166274..18177547Transposable element protein, putative, MuDR, expressed
LOC_Os03g31839OsAffx.15659.1.S1_at2/113+18166274..18177547Transposable element protein, putative, MuDR, expressed
LOC_Os03g31839OsAffx.26827.1.S1_at1/113+18166274..18177547Transposable element protein, putative, MuDR, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25330.1.S1_at--694--5131NONE
GCAAACCCGAAGAATGCTGGACGCT
NONE
OsAffx.25330.1.S1_at--992--2351NONE
AAACCCGAAGAATGCTGGACGCTTA
NONE
OsAffx.25330.1.S1_at--741--1791Chr03:18151687..18151707 (21 bp)
ACCCGAAGAATGCTGGACGCTTACG
LOC_Os03g31810
OsAffx.25330.1.S1_at--537--4211Chr03:18151687..18151709 (23 bp)
CCGAAGAATGCTGGACGCTTACGGC
LOC_Os03g31810
OsAffx.25330.1.S1_at--833--5371Chr03:18151687..18151711 (25 bp)
GAAGAATGCTGGACGCTTACGGCGC
LOC_Os03g31810
OsAffx.25330.1.S1_at--794--2731Chr03:18151688..18151712 (25 bp)
AAGAATGCTGGACGCTTACGGCGCC
LOC_Os03g31810
OsAffx.25330.1.S1_at--358--3011Chr03:18151691..18151715 (25 bp)
AATGCTGGACGCTTACGGCGCCGCC
LOC_Os03g31810
OsAffx.25330.1.S1_at--923--611Chr03:18151692..18151716 (25 bp)
ATGCTGGACGCTTACGGCGCCGCCG
LOC_Os03g31810
OsAffx.25330.1.S1_at--200--8111Chr03:18151737..18152078 (25 bp)
GGACTAAGATGAAGAGGCGTCGCCG
LOC_Os03g31810
OsAffx.25330.1.S1_at--647--4651Chr03:18152070..18152094 (25 bp)
GCGTCGCCGCGCAGTGGAGAGCGGA
LOC_Os03g31810
OsAffx.25330.1.S1_at--831--8011Chr03:18152179..18152203 (25 bp)
GGAGGTGGCGCGGTAGAGGCGGTCA
LOC_Os03g31810
Target Sequence 
GCAAACCCGAAGAATGCTGGACGCTTACGGCGCCGCCGCTTCACGCTTCACGGCGTGGGGACTAAGATGAAGAGGCGTCG
CCGCGCAGTGGAGAGCGGAGGCGGCGGCGACGCGGTGGAGGCTGGAGGCGGCGCGGTGGAGGTGGAGGCGGAGGCAGAGG
CGGAGGCGGAGGCGGTGGAGGCTGGAGGTGGCGCGGTAGAGGCGGTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25330.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis