Browse Element(s) Details


OsAffx.25823.1.S1_at

Description tigr:9632.m00079
TID=OsAffx.25823.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g017509/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g01690Os.50413.1.S1_at11/114+454276..457795Arginine decarboxylase, putative, expressed
LOC_Os04g01710Os.49157.1.S1_s_at11/114+461676..463423Papain family cysteine protease containing protein, expressed
LOC_Os04g01720OsAffx.24453.1.S1_at11/114+464694..469028hypothetical protein
LOC_Os04g01720OsAffx.24453.1.S1_x_at11/114+464694..469028hypothetical protein
LOC_Os04g01720OsAffx.24453.3.S1_x_at5/114+464694..469028hypothetical protein
LOC_Os04g01720OsAffx.24453.3.S1_at1/114+464694..469028hypothetical protein
LOC_Os04g01730OsAffx.31174.4.S1_x_at7/114+470063..470881hypothetical protein
LOC_Os04g01730OsAffx.31174.5.S1_x_at5/114+470063..470881hypothetical protein
LOC_Os04g01740Os.11039.1.S1_s_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740OsAffx.13615.1.S1_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740Os.49651.1.S1_s_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740Os.11039.2.S1_x_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740OsAffx.13615.1.S1_x_at11/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01740Os.11039.3.S1_at10/114+473779..476549Heat shock protein 82, putative, expressed
LOC_Os04g01750OsAffx.25823.1.S1_at9/114+479673..481633hypothetical protein
LOC_Os04g01750OsAffx.29554.1.S1_at1/114+479673..481633hypothetical protein
LOC_Os04g01750OsAffx.30648.1.S1_at1/114+479673..481633hypothetical protein
LOC_Os04g01760OsAffx.20736.1.S1_at2/114+482972..485921hypothetical protein
LOC_Os04g01770OsAffx.10632.1.S1_at2/114+486534..488277retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01780Os.17160.1.S1_at11/114+489327..491551Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os04g01780Os.17160.1.S1_s_at11/114+489327..491551Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os04g01780OsAffx.13616.1.S1_x_at11/114+489327..491551Uncharacterized ACR, COG1399 family protein, expressed
LOC_Os04g01790OsAffx.18976.1.S1_at4/114+492825..496545retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01790OsAffx.18976.1.S1_x_at1/114+492825..496545retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g01800OsAffx.3697.1.S1_at10/114+506088..506955hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.25823.1.S1_at--858--2311NONE
AAAGGTCCCATGGAGACCGGCTTGT
NONE
OsAffx.25823.1.S1_at--839--571Chr04:480544..480568 (25 bp)
AGACCGGCTTGTCTAGGACACGTGT
LOC_Os04g01750
OsAffx.25823.1.S1_at--975--1491Chr04:480500..480524 (25 bp)
AGCACATCATGGGAGCGACACGACG
LOC_Os04g01750
OsAffx.25823.1.S1_at--460--8091Chr04:480489..480513 (25 bp)
GGAGCGACACGACGAACCATTGAAT
LOC_Os04g01750
OsAffx.25823.1.S1_at--782--7051Chr04:480460..480484 (25 bp)
GTAAGGAAGACGACACCGGGCTCAT
LOC_Os04g01750
OsAffx.25823.1.S1_at--808--2291Chr04:480315..480339 (25 bp)
AAAGGATTGGGTCTACTGATTGATA
LOC_Os04g01750
OsAffx.25823.1.S1_at--262--2451NONE
AAAATGCACGCGCATGGCACCGGAA
NONE
OsAffx.25823.1.S1_at--169--8511Chr04:479907..480286 (25 bp)
TGGCACCGGAATTCAGTCCACGGAT
LOC_Os04g01750
OsAffx.25823.1.S1_at--320--2891Chr04:479773..479851 (25 bp)
AAGGGTTTTCTTCATGTCGGATCAA
LOC_Os04g01750
OsAffx.25823.1.S1_at--1146--812Chr11:5923830..5923901 (25 bp)
ATGGTCTTCGAGGAGTCTTGTGATG
NONE
OsAffx.25823.1.S1_at--1080--971Chr04:479707..479731 (25 bp)
AGGAGTCTTGTGATGTGATAGCTAA
LOC_Os04g01750
Target Sequence 
AAAGGTCCCATGGAGACCGGCTTGTCTAGGACACGTGTGATGTGGTGCCGTGCAGCAAGCACATCATGGGAGCGACACGA
CGAACCATTGAATCGAAGTAAGGAAGACGACACCGGGCTCATGAAAAGGAGTGGTGATGCAGCTAAAGGATTGGGTCTAC
TGATTGATAGGAGTGAGACAGTGAAAATGCACGCGCATGGCACCGGAATTCAGTCCACGGATGCGGAAAGCGTGGATGTT
GGATTTGTTAGCTTGGTTCATAAGACGACAAGGAAGAAAGGGTTTTCTTCATGTCGGATCAAGTCAAATTTAAGACAAAA
GGTGAAGGTGAACATGGTCTTCGAGGAGTCTTGTGATGTGATAGCTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.25823.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis