Browse Element(s) Details


OsAffx.26303.1.S1_at

Description tigr:9632.m03179
TID=OsAffx.26303.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3323010/11hypothetical protein
LOC_Os11g183822/11hypothetical protein
LOC_Os02g036501/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33190Os.7877.1.S1_at11/114+19890383..19895680Acetyl-coenzyme A synthetase 2, putative, expressed
LOC_Os04g33200Os.9388.1.S1_at10/114+19896521..19904245expressed protein
LOC_Os04g33210OsAffx.14107.1.S1_at11/114+19907017..19912334ERD1 protein, chloroplast precursor, putative, expressed
LOC_Os04g33220Os.9140.1.S1_at11/114+19912770..19915614SAM domain family protein, expressed
LOC_Os04g33230OsAffx.26303.1.S1_at10/114+19917687..19921074hypothetical protein
LOC_Os04g33230OsAffx.31040.1.S1_at3/114+19917687..19921074hypothetical protein
LOC_Os04g33230OsAffx.20484.1.S1_x_at1/114+19917687..19921074hypothetical protein
LOC_Os04g33230OsAffx.20484.1.S1_at1/114+19917687..19921074hypothetical protein
LOC_Os04g33240Os.49410.1.A1_at6/114+19922182..19923346oxidoreductase, short chain dehydrogenase/reductase family protein, expressed
LOC_Os04g33250OsAffx.14108.1.S1_at10/114+19927570..19928063LOB domain protein 12, putative
LOC_Os04g33250Os.5212.1.S1_at1/114+19927570..19928063LOB domain protein 12, putative
LOC_Os04g33260Os.51649.1.S1_at11/114+19929875..19934775expressed protein
LOC_Os04g33260Os.27418.1.S1_at4/114+19929875..19934775expressed protein
LOC_Os04g33280Os.18589.1.S1_at11/114+19937281..19943641expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26303.1.S1_at--68--2993Chr03:14211158..14211182 (25 bp)
AATGTATCATCAGCAGCCGGTACTC
NONE
OsAffx.26303.1.S1_at--910--1672Chr11:10357045..10357069 (25 bp)
AGCCGGTACTCGTAGGTATCATGCC
LOC_Os11g18382
OsAffx.26303.1.S1_at--647--271Chr04:19920839..19920863 (25 bp)
ATACCTATGGTATCGCGGACCGGTA
LOC_Os04g33230
OsAffx.26303.1.S1_at--180--6994Chr03:14211240..14211261 (22 bp)
GTACCCCGTATCATGCCTGGTATCA
NONE
OsAffx.26303.1.S1_at--11--10172Chr02:16556396..16556461 (25 bp)
TATCAGGCCTGATACCTGTAGGTAT
NONE
OsAffx.26303.1.S1_at--213--411Chr04:19920744..19920768 (25 bp)
ATCAGGCTTGGTACCTGGGTTTCAT
LOC_Os04g33230
OsAffx.26303.1.S1_at--177--1031Chr04:19920715..19920739 (25 bp)
AGGTGTTAGACCTGGTACTCGTAGG
LOC_Os04g33230
OsAffx.26303.1.S1_at--1007--9891Chr04:19920700..19920724 (25 bp)
TACTCGTAGGTATCAGACCTGCTAC
LOC_Os04g33230
OsAffx.26303.1.S1_at--747--5831NONE
GACCTGCTACCTGATTAGCGACTTA
NONE
OsAffx.26303.1.S1_at--436--9991Chr04:19919589..19919613 (25 bp)
TAGCGACTTAACTTTCACCGAGAGG
LOC_Os04g33230
OsAffx.26303.1.S1_at--113--10011Chr04:19917769..19917793 (25 bp)
TAGCAATTGGTAGTGACCGGTGGAT
LOC_Os04g33230
Target Sequence 
AATGTATCATCAGCAGCCGGTACTCGTAGGTATCATGCCTGATACCTATGGTATCGCGGACCGGTACCCCGTATCATGCC
TGGTATCAGGCCTGATACCTGTAGGTATCAGGCTTGGTACCTGGGTTTCATGGTTAGGTGTTAGACCTGGTACTCGTAGG
TATCAGACCTGCTACCTGATTAGCGACTTAACTTTCACCGAGAGGTGGATAGCAATTGGTAGTGACCGGTGGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26303.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis