Browse Element(s) Details


OsAffx.26488.1.S1_at

Description tigr:9632.m04505
TID=OsAffx.26488.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Similar to 56300-57889
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4673010/11Pollen thioesterase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g46680Os.50594.1.S1_at11/114+27456211..27457548Zinc finger, C2H2 type family protein, expressed
LOC_Os04g46690OsAffx.26141.2.S1_at11/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690OsAffx.26141.4.S1_at9/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690OsAffx.26141.3.S1_x_at7/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690OsAffx.26141.4.S1_x_at6/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690Os.38172.1.S1_x_at5/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690Os.43567.1.S1_x_at3/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690Os.53217.1.S1_x_at1/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46690Os.29987.1.S1_at1/114+27460934..27468516hAT family dimerisation domain containing protein
LOC_Os04g46700Os.24315.1.S2_at11/114+27471768..27475152expressed protein
LOC_Os04g46700Os.24315.1.S1_at11/114+27471768..27475152expressed protein
LOC_Os04g46710OsAffx.26487.1.S1_at11/114+27475404..27477180thioesterase family protein
LOC_Os04g46720NANA4+27480036..27480548transposon protein, putative, unclassified
LOC_Os04g46730OsAffx.26488.1.S1_at10/114+27481949..27483552Pollen thioesterase, putative, expressed
LOC_Os04g46740Os.52445.1.S1_at11/114+27487575..27489753Pectinesterase family protein, expressed
LOC_Os04g46750Os.17642.1.S1_a_at11/114+27501008..27506010Glycogenin, putative, expressed
LOC_Os04g46760OsAffx.26489.1.S1_at11/114+27507233..27509399trehalose-phosphatase family protein

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Gene Ontology Classification
GO idTypeName
GO:0016291molecular_functionacyl-CoA thioesterase activity
GO:0016788molecular_functionhydrolase activity, acting on ester bonds
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26488.1.S1_at--265--1951NONE
ACGGCCGCCTGAGGTTGGATCAGTT
NONE
OsAffx.26488.1.S1_at--777--4431Chr04:27482855..27482879 (25 bp)
GCCATCTATGCTAGTTACTGCCAAC
LOC_Os04g46730
OsAffx.26488.1.S1_at--818--4371Chr04:27482664..27482859 (25 bp)
CCAACATGGTCGTCATGAGCTACTT
LOC_Os04g46730
OsAffx.26488.1.S1_at--120--9051Chr04:27482622..27482646 (25 bp)
TGCAGATGCAGTAGCACGCAGCGGT
LOC_Os04g46730
OsAffx.26488.1.S1_at--656--1751Chr04:27482572..27482596 (25 bp)
ACCTCAAGTACTACGCGCCTTTGAG
LOC_Os04g46730
OsAffx.26488.1.S1_at--393--2191Chr04:27482392..27482416 (25 bp)
ACAAGTTCGTCGTTAAGGTCAGGCT
LOC_Os04g46730
OsAffx.26488.1.S1_at--711--9771Chr04:27482379..27482403 (25 bp)
TAAGGTCAGGCTTGCGAGCACAAAA
LOC_Os04g46730
OsAffx.26488.1.S1_at--115--7991Chr04:27482347..27482371 (25 bp)
GGATGATATTCGAGCACTTCATTGA
LOC_Os04g46730
OsAffx.26488.1.S1_at--937--4771Chr04:27482060..27482343 (25 bp)
GCTGCCTAATCGTGAGCTCATTTTG
LOC_Os04g46730
OsAffx.26488.1.S1_at--988--7051Chr04:27482014..27482038 (25 bp)
TGTTTGAACAAAGACTACCGCCCCA
LOC_Os04g46730
OsAffx.26488.1.S1_at--491--1811Chr04:27481990..27482014 (25 bp)
ACCCGTATATCTCCAGAGTTCCTGT
LOC_Os04g46730
Target Sequence 
ACGGCCGCCTGAGGTTGGATCAGTTTTTCGAGGTGGAGATGAAGGTACGAGATTATGAACTCGACCAATATGGGGTTGTC
AACAATGCCATCTATGCTAGTTACTGCCAACATGGTCGTCATGAGCTACTTGAAAGTGTAGGCATAAGTGCAGATGCAGT
AGCACGCAGCGGTGAGTCGCTGGCCCTCTCTGAACTGCACCTCAAGTACTACGCGCCTTTGAGAAGTGGTGACAAGTTCG
TCGTTAAGGTCAGGCTTGCGAGCACAAAAGGTATAAGGATGATATTCGAGCACTTCATTGAAAAGCTGCCTAATCGTGAG
CTCATTTTGGAAGCGAAGGCAACAGCGGTTTGTTTGAACAAAGACTACCGCCCCACCCGTATATCTCCAGAGTTCCTGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26488.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis