Browse Element(s) Details


OsAffx.26779.1.S1_x_at

Description tigr:9633.m00715
TID=OsAffx.26779.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=expressed protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g079809/11expressed protein
LOC_Os05g166402/11expressed protein
LOC_Os05g079601/11F-box protein interaction domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g07920Os.41695.15.S1_s_at11/115+4265754..4272796transposon protein, putative, Mutator sub-class
LOC_Os05g07920Os.41695.5.S1_x_at7/115+4265754..4272796transposon protein, putative, Mutator sub-class
LOC_Os05g07920Os.41695.3.S1_x_at6/115+4265754..4272796transposon protein, putative, Mutator sub-class
LOC_Os05g07920Os.41695.2.S1_x_at5/115+4265754..4272796transposon protein, putative, Mutator sub-class
LOC_Os05g07920Os.41695.4.S1_x_at1/115+4265754..4272796transposon protein, putative, Mutator sub-class
LOC_Os05g07930OsAffx.29502.1.S1_at10/115+4274310..4277005GRF zinc finger family protein
LOC_Os05g07930OsAffx.29502.2.S1_at5/115+4274310..4277005GRF zinc finger family protein
LOC_Os05g07930OsAffx.29502.2.S1_x_at4/115+4274310..4277005GRF zinc finger family protein
LOC_Os05g07940Os.19587.1.S1_at11/115+4279452..4284082lactoylglutathione lyase family protein, putative, expressed
LOC_Os05g07940Os.10620.1.S1_at11/115+4279452..4284082lactoylglutathione lyase family protein, putative, expressed
LOC_Os05g07940Os.19587.1.S2_at10/115+4279452..4284082lactoylglutathione lyase family protein, putative, expressed
LOC_Os05g07950OsAffx.26781.2.S1_at10/115+4287115..4288441F-box domain containing protein, expressed
LOC_Os05g07960Os.26779.1.S1_at11/115+4290554..4292377F-box protein interaction domain containing protein, expressed
LOC_Os05g07960OsAffx.26779.1.S1_x_at1/115+4290554..4292377F-box protein interaction domain containing protein, expressed
LOC_Os05g07970Os.14919.1.S1_at1/115+4293296..4294795hypothetical protein
LOC_Os05g07980OsAffx.26779.1.S1_x_at9/115+4296238..4299886expressed protein
LOC_Os05g07980OsAffx.26779.1.S1_at7/115+4296238..4299886expressed protein
LOC_Os05g07980Os.51733.1.S1_x_at7/115+4296238..4299886expressed protein
LOC_Os05g07980Os.50315.2.A1_at1/115+4296238..4299886expressed protein
LOC_Os05g07990OsAffx.26780.1.S1_at9/115+4300724..4301864hypothetical protein
LOC_Os05g08000OsAffx.26781.1.S1_at11/115+4303863..4305161hypothetical protein
LOC_Os05g08010Os.7402.1.S1_at11/115+4307738..4309362F-box domain containing protein, expressed
LOC_Os05g08020NANA5+4314883..4316263retrotransposon protein, putative, unclassified
LOC_Os05g08030NANA5+4323743..4324908transposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26779.1.S1_x_at--948--2571Chr05:4296765..4296789 (25 bp)
AACGAGTTGGACTGCTTTTCGTCCA
LOC_Os05g07980
OsAffx.26779.1.S1_x_at--1153--9711Chr05:4296737..4296761 (25 bp)
TCAAGATCTGGGTCACTGCTCACAA
LOC_Os05g07980
OsAffx.26779.1.S1_x_at--778--10872Chr05:9422290..9422313 (24 bp)
TTGGCTCCAGAAGTGTGTCCTGCAG
LOC_Os05g16640
OsAffx.26779.1.S1_x_at--834--6212Chr05:9422331..9422355 (25 bp)
GAGGCGCAAGCGCAAGGTCTCTTTC
LOC_Os05g16640
OsAffx.26779.1.S1_x_at--799--5031Chr05:4296581..4296605 (25 bp)
GCAGAGACTGGCTCACCATGATGGA
LOC_Os05g07980
OsAffx.26779.1.S1_x_at--343--9371Chr05:4296485..4296509 (25 bp)
TCGACCACCAGGCTGATCATCAGAA
LOC_Os05g07980
OsAffx.26779.1.S1_x_at--466--2291Chr05:4296458..4296482 (25 bp)
AAATGACGACTGAATCGCACTTGAG
LOC_Os05g07980
OsAffx.26779.1.S1_x_at--398--531Chr05:4296445..4296469 (25 bp)
ATCGCACTTGAGAAACGAGTCGCAG
LOC_Os05g07980
OsAffx.26779.1.S1_x_at--655--7092Chr05:4296353..4296376 (24 bp)
GTCAAAGCTGACTACGGTTCTGGAA
LOC_Os05g07980
OsAffx.26779.1.S1_x_at--1147--1911NONE
ACGGTTCTGGAACGCCTGACAAAGT
NONE
OsAffx.26779.1.S1_x_at--707--3311NONE
CACTGAACCATTACGAGGACCTTAA
NONE
Target Sequence 
AACGAGTTGGACTGCTTTTCGTCCAGCTTCAAGATCTGGGTCACTGCTCACAAGTCCTACGTCGAGTCCCTCAACGCTTG
GCTCCAGAAGTGTGTCCTGCAGCCAGCCCAGGACCGATGGAGGCGCAAGCGCAAGGTCTCTTTCCCTCCCCGCCACGCGC
TCTCCCCTCCGATCTTCGTTCTCTGCAGAGACTGGCTCACCATGATGGAGTCACAGTCACTCCCCACAGATGAGCTCTGC
AAGTCTATCAAAGAGGTGGTGCAGCTCCTGCGCGGTTCGTTCGACCACCAGGCTGATCATCAGAACAAAATGACGACTGA
ATCGCACTTGAGAAACGAGTCGCAGGAATGTGGGATGCTGGAGAATAACGAGCAGGAGGTGAGTGGAAGCGTAAAAGCAG
TGGAAGGGTTGCAGTCAAAGCTGACTACGGTTCTGGAACGCCTGACAAAGTTCTCAGAGGCTTCACTGAACCATTACGAG
GACCTTAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26779.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis