Browse Element(s) Details


OsAffx.27828.1.S1_at

Description tigr:9634.m02592
TID=OsAffx.27828.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os06g2618011/11hypothetical protein
LOC_Os06g237103/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os06g26130OsAffx.14839.1.S1_at1/116+15288366..15291158hypothetical protein
LOC_Os06g26130Os.31845.1.S1_x_at1/116+15288366..15291158hypothetical protein
LOC_Os06g26140NANA6+15293147..15294511hypothetical protein
LOC_Os06g26150OsAffx.22699.1.S1_x_at3/116+15295175..15301561retrotransposon protein, putative, unclassified
LOC_Os06g26150OsAffx.18275.1.S1_x_at2/116+15295175..15301561retrotransposon protein, putative, unclassified
LOC_Os06g26150OsAffx.13786.1.S1_x_at1/116+15295175..15301561retrotransposon protein, putative, unclassified
LOC_Os06g26160OsAffx.28610.2.S1_x_at11/116+15301894..15304365hypothetical protein
LOC_Os06g26160OsAffx.28610.2.S1_at10/116+15301894..15304365hypothetical protein
LOC_Os06g26160OsAffx.28610.1.S1_at6/116+15301894..15304365hypothetical protein
LOC_Os06g26160OsAffx.28610.1.S1_x_at4/116+15301894..15304365hypothetical protein
LOC_Os06g26160OsAffx.28610.3.S1_at3/116+15301894..15304365hypothetical protein
LOC_Os06g26160Os.4760.1.S1_at1/116+15301894..15304365hypothetical protein
LOC_Os06g26160OsAffx.28610.4.S1_x_at1/116+15301894..15304365hypothetical protein
LOC_Os06g26170OsAffx.4944.1.S1_at10/116+15310053..15311897hypothetical protein
LOC_Os06g26180OsAffx.27828.1.S1_at11/116+15313826..15315157hypothetical protein
LOC_Os06g26180OsAffx.23345.1.S1_at2/116+15313826..15315157hypothetical protein
LOC_Os06g26180OsAffx.28650.1.S1_x_at1/116+15313826..15315157hypothetical protein
LOC_Os06g26190Os.21300.2.S1_at1/116+15323219..15325452hypothetical protein
LOC_Os06g26190Os.21300.2.S1_x_at1/116+15323219..15325452hypothetical protein
LOC_Os06g26190OsAffx.27854.1.S1_at1/116+15323219..15325452hypothetical protein
LOC_Os06g26210OsAffx.15622.1.S1_at11/116+15328732..15331084hypothetical protein
LOC_Os06g26234OsAffx.15623.1.S1_at11/116+15334688..15364532Alpha amylase, catalytic domain containing protein, expressed
LOC_Os06g26234Os.27031.1.S1_at11/116+15334688..15364532Alpha amylase, catalytic domain containing protein, expressed
LOC_Os06g26234OsAffx.28472.1.A1_x_at10/116+15334688..15364532Alpha amylase, catalytic domain containing protein, expressed
LOC_Os06g26234OsAffx.13933.1.S1_x_at1/116+15334688..15364532Alpha amylase, catalytic domain containing protein, expressed
LOC_Os06g26234Os.57509.1.A1_at1/116+15334688..15364532Alpha amylase, catalytic domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.27828.1.S1_at--813--811Chr06:15315102..15315126 (25 bp)
ATGGTGCAGCGGTTTGCTCTGAGAT
LOC_Os06g26180
OsAffx.27828.1.S1_at--372--6851Chr06:15315091..15315115 (25 bp)
GTTTGCTCTGAGATGGACGAGATCG
LOC_Os06g26180
OsAffx.27828.1.S1_at--15--5791Chr06:15315016..15315040 (25 bp)
GACGAGCTCGACACAAGATGTTCGA
LOC_Os06g26180
OsAffx.27828.1.S1_at--62--6291Chr06:15315000..15315024 (25 bp)
GATGTTCGATCCATGCAACAGGCAA
LOC_Os06g26180
OsAffx.27828.1.S1_at--186--1871Chr06:15314961..15314985 (25 bp)
ACGAGTTAGGCATTATTTACAGATC
LOC_Os06g26180
OsAffx.27828.1.S1_at--889--9231Chr06:15314931..15314955 (25 bp)
TCCATGATTATTGTGCGGCGAAGCT
LOC_Os06g26180
OsAffx.27828.1.S1_at--255--8871Chr06:15314321..15314345 (25 bp)
TGATGAGGATCTCACATGGGTCCCA
LOC_Os06g26180
OsAffx.27828.1.S1_at--567--3492Chr10:5336953..5336974 (22 bp)
CATGGGTCCCACAATGGCTTGGTCC
NONE
OsAffx.27828.1.S1_at--238--852Chr06:15313922..15314318 (25 bp)
ATGGCTTGGTCCCACTTAATTTTGG
LOC_Os06g26180
OsAffx.27828.1.S1_at--483--7894Chr08:10518747..10519110 (25 bp)
GGTTCAATGTGCCAAGTTTCAAGAT
NONE
OsAffx.27828.1.S1_at--764--9895Chr11:14550713..14550733 (21 bp)
TACTTTTTGAGTTACCATGGTGAGT
NONE
Target Sequence 
ATGGTGCAGCGGTTTGCTCTGAGATGGACGAGATCGACGGGAACGGCGGCGCAACGAGCGGCGGCGCTCTGGACACCGAG
GACACCGACGAGCTCGACACAAGATGTTCGATCCATGCAACAGGCAAAACAAAGGACATGAACGAGTTAGGCATTATTTA
CAGATCATTTTTCCATGATTATTGTGCGGCGAAGCTCACCAGAGAAATGAAAAATAAATTAAATGAGAAGTATGTAGATG
ATGAGTTGGCTGTGATGAGGATCTCACATGGGTCCCACAATGGCTTGGTCCCACTTAATTTTGGGGAGACAAGGTTGCTG
CAAAGTGGACAAGGATTTGATGGTTCAATGTGCCAAGTTTCAAGATTTAATTACTTTTTGAGTTACCATGGTGAGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.27828.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis