Browse Element(s) Details


OsAffx.28727.1.S1_at

Description tigr:9635.m03281
TID=OsAffx.28727.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g3332011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g33280Os.6516.1.S1_at11/117+19897516..19898337expressed protein
LOC_Os07g33290OsAffx.10075.1.S1_at4/117+19902255..19903268hypothetical protein
LOC_Os07g33300OsAffx.5514.2.S1_at11/117+19903331..19907930expressed protein
LOC_Os07g33300Os.28197.1.S2_at11/117+19903331..19907930expressed protein
LOC_Os07g33300Os.28197.1.S1_a_at10/117+19903331..19907930expressed protein
LOC_Os07g33300OsAffx.5514.1.S1_x_at4/117+19903331..19907930expressed protein
LOC_Os07g33310Os.14708.1.S1_at11/117+19909672..19912872MATE efflux family protein, expressed
LOC_Os07g33310Os.14708.2.S1_at5/117+19909672..19912872MATE efflux family protein, expressed
LOC_Os07g33320OsAffx.28727.1.S1_at11/117+19915361..19915690expressed protein
LOC_Os07g33330Os.16984.2.S1_a_at11/117+19918642..19922640RNA Binding Protein 45, putative, expressed
LOC_Os07g33340Os.24708.1.S1_at11/117+19924412..19930300DEAD/DEAH box helicase family protein, expressed
LOC_Os07g33350Os.49631.2.S1_x_at11/117+19933799..19934729Hsp20/alpha crystallin family protein, expressed
LOC_Os07g33360Os.24533.1.S1_x_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed
LOC_Os07g33360Os.24533.1.S1_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed
LOC_Os07g33360Os.46297.1.S1_at11/117+19936793..19941475chromosoma associate protein subunit H2, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.28727.1.S1_at--205--4151Chr07:19915404..19915428 (25 bp)
CGCCGTTCGCGTACGCGAAGGTGGA
LOC_Os07g33320
OsAffx.28727.1.S1_at--77--6711Chr07:19915408..19915432 (25 bp)
GTTCGCGTACGCGAAGGTGGACAAG
LOC_Os07g33320
OsAffx.28727.1.S1_at--438--5011Chr07:19915459..19915483 (25 bp)
GCAGGCGCAGTACCTGATCCACAAG
LOC_Os07g33320
OsAffx.28727.1.S1_at--180--3491Chr07:19915460..19915484 (25 bp)
CAGGCGCAGTACCTGATCCACAAGG
LOC_Os07g33320
OsAffx.28727.1.S1_at--336--891Chr07:19915461..19915485 (25 bp)
AGGCGCAGTACCTGATCCACAAGGT
LOC_Os07g33320
OsAffx.28727.1.S1_at--1042--8371Chr07:19915462..19915486 (25 bp)
GGCGCAGTACCTGATCCACAAGGTG
LOC_Os07g33320
OsAffx.28727.1.S1_at--1052--6971Chr07:19915468..19915492 (25 bp)
GTACCTGATCCACAAGGTGCTGGAG
LOC_Os07g33320
OsAffx.28727.1.S1_at--426--9971Chr07:19915469..19915493 (25 bp)
TACCTGATCCACAAGGTGCTGGAGG
LOC_Os07g33320
OsAffx.28727.1.S1_at--441--1771Chr07:19915470..19915494 (25 bp)
ACCTGATCCACAAGGTGCTGGAGGG
LOC_Os07g33320
OsAffx.28727.1.S1_at--336--5731Chr07:19915611..19915635 (25 bp)
GACTGCAGAGGCACCTCCGGAGCCT
LOC_Os07g33320
OsAffx.28727.1.S1_at--603--9031Chr07:19915614..19915638 (25 bp)
TGCAGAGGCACCTCCGGAGCCTGAG
LOC_Os07g33320
Target Sequence 
CGCCGTTCGCGTACGCGAAGGTGGACAAGGTGGACGCCGAGGAGGCGCGGCACCTGCAGGCGCAGTACCTGATCCACAAG
GTGCTGGAGGGGTCGTCGGCGGCGAGGGGGAGGGGGAGGGGGAGGAGGCCGGCGGCGAGGCAGGTCGGCGTCCGGCTCAG
GCGGCTCAGGCTCGCCGCCCGGAGCGTCCGGCTGCGCCTCTGCCGGGGACTGCAGAGGCACCTCCGGAGCCTGAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.28727.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis