Browse Element(s) Details


OsAffx.29394.1.S1_s_at

Description tigr:9636.m02789
TID=OsAffx.29394.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Actin
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os08g2819011/11Actin-like protein 2, putative, expressed
LOC_Os01g490801/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os08g28150OsAffx.17201.1.S1_at10/118+17051492..17053073hypothetical protein
LOC_Os08g28160OsAffx.29392.1.S1_at11/118+17054441..17055775hypothetical protein
LOC_Os08g28170OsAffx.29393.1.S1_x_at11/118+17060489..17063020xanthine/uracil permease family protein, expressed
LOC_Os08g28170Os.14457.1.S1_at11/118+17060489..17063020xanthine/uracil permease family protein, expressed
LOC_Os08g28180Os.24203.1.A1_at11/118+17066467..17070235pentatricopeptide, putative, expressed
LOC_Os08g28190OsAffx.29394.1.S1_s_at11/118+17071842..17076528Actin-like protein 2, putative, expressed
LOC_Os08g28190OsAffx.29394.1.S1_at9/118+17071842..17076528Actin-like protein 2, putative, expressed
LOC_Os08g28200Os.52946.1.S1_at4/118+17078872..17079543expressed protein
LOC_Os08g28200OsAffx.13417.1.S1_x_at1/118+17078872..17079543expressed protein
LOC_Os08g28214OsAffx.29395.1.S1_at11/118+17081287..17088397Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os08g28214Os.53233.1.S1_at11/118+17081287..17088397Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os08g28214Os.7693.1.S1_s_at11/118+17081287..17088397Tesmin/TSO1-like CXC domain containing protein, expressed
LOC_Os08g28230OsAffx.5963.1.S1_at11/118+17092535..17094947Iron-sulfur cluster assembly accessory protein
LOC_Os08g28240OsAffx.17202.1.S1_at10/118+17096324..17102645Retinal pigment epithelial membrane protein

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Gene Ontology Classification
GO idTypeName
GO:0000902biological_processcellular morphogenesis
GO:0007010biological_processcytoskeleton organization and biogenesis
GO:0007015biological_processactin filament organization
GO:0009416biological_processresponse to light stimulus
GO:0009825biological_processmultidimensional cell growth
GO:0010090biological_processtrichome morphogenesis (sensu Magnoliophyta)
GO:0030029biological_processactin filament-based process
GO:0030036biological_processactin cytoskeleton organization and biogenesis
GO:0005739cellular_componentmitochondrion
GO:0005856cellular_componentcytoskeleton
GO:0005885cellular_componentArp2/3 protein complex
GO:0015629cellular_componentactin cytoskeleton
GO:0005200molecular_functionstructural constituent of cytoskeleton
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29394.1.S1_s_at--925--5332Chr01:28537377..28537405 (25 bp)
GAAGTACCATGTATCCTGGTCTGCC
LOC_Os01g49080
OsAffx.29394.1.S1_s_at--620--4271Chr08:17072740..17072990 (25 bp)
CCTGGTCTGCCAAGTCGACTAGAGA
LOC_Os08g28190
OsAffx.29394.1.S1_s_at--693--8151Chr08:17072714..17072738 (25 bp)
GGAAATGCTTGATCGCTATCTTGAT
LOC_Os08g28190
OsAffx.29394.1.S1_s_at--585--2191Chr08:17072438..17072462 (25 bp)
ACACATGGTTTACCTGGGTGGTGCA
LOC_Os08g28190
OsAffx.29394.1.S1_s_at--1022--7491Chr08:17072421..17072445 (25 bp)
GTGGTGCAGTACTCGCTGGAATCAT
LOC_Os08g28190
OsAffx.29394.1.S1_s_at--881--5271Chr08:17072165..17072189 (25 bp)
GAAGGCCTTGCGTGCCTAAGGAAGT
LOC_Os08g28190
OsAffx.29394.1.S1_s_at--1024--2851Chr08:17072144..17072168 (25 bp)
AAGTGTGGACAAGCATAGCCGTCGA
LOC_Os08g28190
OsAffx.29394.1.S1_s_at--309--3311Chr08:17071989..17072013 (25 bp)
CACATAGTGTTGTTTGTTGTCCCTA
LOC_Os08g28190
OsAffx.29394.1.S1_s_at--321--7231Chr08:17071971..17071995 (25 bp)
GTCCCTATTGTTCAGGATACTTGTT
LOC_Os08g28190
OsAffx.29394.1.S1_s_at--452--2071Chr08:17071953..17071977 (25 bp)
ACTTGTTGGTGCATGTTGTAGCCTA
LOC_Os08g28190
OsAffx.29394.1.S1_s_at--1092--6631Chr08:17071939..17071963 (25 bp)
GTTGTAGCCTAGAAGCCACTATGAA
LOC_Os08g28190
Target Sequence 
GAAGTACCATGTATCCTGGTCTGCCAAGTCGACTAGAGAAGGAAATGCTTGATCGCTATCTTGATGTGGTTCTGAAGGGA
AACAAAGATGGACTGAAGAAATTGCGTTTGCGGATAGAGGATCCGCCACGGAGAAAACACATGGTTTACCTGGGTGGTGC
AGTACTCGCTGGAATCATGAAGGATTCACCTGAATTCTGGATTACAAGGCAGGAATACCAGGAAGAAGGCCTTGCGTGCC
TAAGGAAGTGTGGACAAGCATAGCCGTCGAGAGACAAAAAGGAAACCTATGTTTAGATGATGGATGCACATTACTTGTAG
AAAGATGAGCACATAGTGTTGTTTGTTGTCCCTATTGTTCAGGATACTTGTTGGTGCATGTTGTAGCCTAGAAGCCACTA
TGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29394.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis