Browse Element(s) Details


OsAffx.29755.1.S1_s_at

Description tigr:9635.m01280
TID=OsAffx.29755.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g1299011/11hypothetical protein
LOC_Os04g3483011/11hypothetical protein
LOC_Os09g2552011/11hypothetical protein
LOC_Os05g102709/11hypothetical protein
LOC_Os11g125107/11hypothetical protein
LOC_Os06g369606/11hypothetical protein
LOC_Os12g244105/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g12950OsAffx.10155.1.S1_at3/117+7426994..7434261transposon protein, putative, Mutator sub-class
LOC_Os07g12950Os.41248.4.S1_x_at2/117+7426994..7434261transposon protein, putative, Mutator sub-class
LOC_Os07g12950OsAffx.15069.1.S1_at1/117+7426994..7434261transposon protein, putative, Mutator sub-class
LOC_Os07g12950OsAffx.10155.1.S1_x_at1/117+7426994..7434261transposon protein, putative, Mutator sub-class
LOC_Os07g12950OsAffx.20187.1.S1_at1/117+7426994..7434261transposon protein, putative, Mutator sub-class
LOC_Os07g12950OsAffx.380.1.S1_at1/117+7426994..7434261transposon protein, putative, Mutator sub-class
LOC_Os07g12959NANA7+7436149..7437641NA
LOC_Os07g12970NANA7+7439810..7443009hypothetical protein
LOC_Os07g12980OsAffx.22699.1.S1_x_at2/117+7443343..7448725retrotransposon protein, putative, unclassified
LOC_Os07g12980OsAffx.16451.1.A1_x_at2/117+7443343..7448725retrotransposon protein, putative, unclassified
LOC_Os07g12980OsAffx.16451.1.A1_at1/117+7443343..7448725retrotransposon protein, putative, unclassified
LOC_Os07g12980OsAffx.8279.1.S1_at1/117+7443343..7448725retrotransposon protein, putative, unclassified
LOC_Os07g12990OsAffx.29755.1.S1_s_at11/117+7450746..7451786hypothetical protein
LOC_Os07g13000Os.10731.1.A1_a_at11/117+7455324..7457450retrotransposon protein, putative, unclassified
LOC_Os07g13000OsAffx.31869.1.S1_at10/117+7455324..7457450retrotransposon protein, putative, unclassified
LOC_Os07g13000Os.48015.1.A1_at9/117+7455324..7457450retrotransposon protein, putative, unclassified
LOC_Os07g13000Os.48015.1.A1_x_at6/117+7455324..7457450retrotransposon protein, putative, unclassified
LOC_Os07g13000OsAffx.31869.5.S1_x_at4/117+7455324..7457450retrotransposon protein, putative, unclassified
LOC_Os07g13000OsAffx.31869.3.S1_x_at2/117+7455324..7457450retrotransposon protein, putative, unclassified
LOC_Os07g13000OsAffx.31869.3.S1_s_at1/117+7455324..7457450retrotransposon protein, putative, unclassified
LOC_Os07g13010OsAffx.29755.3.S1_x_at6/117+7459278..7467081Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os07g13010OsAffx.29755.4.S1_x_at5/117+7459278..7467081Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os07g13010OsAffx.29755.5.S1_x_at5/117+7459278..7467081Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os07g13010Os.44324.1.A1_at4/117+7459278..7467081Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os07g13010OsAffx.29755.2.S1_x_at4/117+7459278..7467081Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os07g13020OsAffx.30941.9.S1_x_at11/117+7468066..7471697SWIM zinc finger family protein
LOC_Os07g13020OsAffx.30941.1.S1_x_at8/117+7468066..7471697SWIM zinc finger family protein
LOC_Os07g13020OsAffx.30941.5.S1_x_at7/117+7468066..7471697SWIM zinc finger family protein
LOC_Os07g13020OsAffx.30941.2.S1_x_at5/117+7468066..7471697SWIM zinc finger family protein
LOC_Os07g13030OsAffx.28427.2.S1_x_at11/117+7472608..7474077hypothetical protein
LOC_Os07g13030OsAffx.28427.2.S1_at11/117+7472608..7474077hypothetical protein
LOC_Os07g13030OsAffx.28427.1.S1_x_at4/117+7472608..7474077hypothetical protein
LOC_Os07g13040OsAffx.5308.1.S1_at10/117+7474489..7478034hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29755.1.S1_s_at--134--10413Chr07:7451242..7451266 (25 bp)
TTATTGAGAATTCTGCTTTTGGTTC
LOC_Os07g12990
OsAffx.29755.1.S1_s_at--584--9473Chr07:7451253..7451277 (25 bp)
TCTGCTTTTGGTTCTCTTCTAAACT
LOC_Os07g12990
OsAffx.29755.1.S1_s_at--100--8574Chr07:7451261..7451285 (25 bp)
TGGTTCTCTTCTAAACTTTCAAAGG
LOC_Os07g12990
OsAffx.29755.1.S1_s_at--372--3677Chr07:7451276..7451300 (25 bp)
CTTTCAAAGGTGTGCTATACCACTA
LOC_Os07g12990
OsAffx.29755.1.S1_s_at--232--7336Chr07:7451287..7451311 (25 bp)
GTGCTATACCACTATCTTTTGTCAA
LOC_Os07g12990
OsAffx.29755.1.S1_s_at--176--7097Chr07:7451307..7451331 (25 bp)
GTCAAATGGATAGCTAGTCACACTG
LOC_Os07g12990
OsAffx.29755.1.S1_s_at--19--9675Chr07:7451335..7451359 (25 bp)
TCAGCTGCTCAGATATAGTTGTCAA
LOC_Os07g12990
OsAffx.29755.1.S1_s_at--1045--7077Chr07:7451355..7451379 (25 bp)
GTCAATGGGAGATCCATACCAATCA
LOC_Os07g12990
OsAffx.29755.1.S1_s_at--284--3276Chr07:7451383..7451407 (25 bp)
CAAACACCACCAACTTCATACTTGG
LOC_Os07g12990
OsAffx.29755.1.S1_s_at--488--2056Chr07:7451395..7451419 (25 bp)
ACTTCATACTTGGTATCCCAAATGG
LOC_Os07g12990
OsAffx.29755.1.S1_s_at--825--9316Chr07:7451410..7451434 (25 bp)
TCCCAAATGGAGGTTTAGAGATCAA
LOC_Os07g12990
Target Sequence 
TTATTGAGAATTCTGCTTTTGGTTCTCTTCTAAACTTTCAAAGGTGTGCTATACCACTATCTTTTGTCAAATGGATAGCT
AGTCACACTGACGTCAGCTGCTCAGATATAGTTGTCAATGGGAGATCCATACCAATCAATCCAAACACCACCAACTTCAT
ACTTGGTATCCCAAATGGAGGTTTAGAGATCAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29755.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis