Browse Element(s) Details


OsAffx.29755.5.S1_x_at

Description tigr:9639.m01198
TID=OsAffx.29755.5
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os11g1251011/11hypothetical protein
LOC_Os06g369609/11hypothetical protein
LOC_Os12g244106/11hypothetical protein
LOC_Os07g130105/11Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os09g255204/11hypothetical protein
LOC_Os05g102702/11hypothetical protein
LOC_Os09g084401/11MtN3/saliva family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os11g12470Os.55418.1.S1_at11/1111+6964096..6966445expressed protein
LOC_Os11g12480Os.50567.1.S1_at11/1111+6970600..6972833F-box domain containing protein, expressed
LOC_Os11g12480OsAffx.12394.1.S1_at1/1111+6970600..6972833F-box domain containing protein, expressed
LOC_Os11g12490OsAffx.30941.2.S1_x_at11/1111+6975205..6981340transposon protein, putative, unclassified
LOC_Os11g12490OsAffx.30941.1.S1_x_at8/1111+6975205..6981340transposon protein, putative, unclassified
LOC_Os11g12490OsAffx.30941.9.S1_x_at8/1111+6975205..6981340transposon protein, putative, unclassified
LOC_Os11g12490OsAffx.30941.5.S1_x_at7/1111+6975205..6981340transposon protein, putative, unclassified
LOC_Os11g12500OsAffx.29755.4.S1_x_at11/1111+6982152..6985432Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os11g12500OsAffx.29755.2.S1_at10/1111+6982152..6985432Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os11g12500OsAffx.29755.2.S1_x_at8/1111+6982152..6985432Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os11g12500OsAffx.29755.3.S1_x_at4/1111+6982152..6985432Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os11g12500Os.44324.1.A1_at3/1111+6982152..6985432Ulp1 protease family, C-terminal catalytic domain containing protein
LOC_Os11g12510OsAffx.29755.5.S1_x_at11/1111+6986475..6990310hypothetical protein
LOC_Os11g12510OsAffx.29755.1.S1_s_at7/1111+6986475..6990310hypothetical protein
LOC_Os11g12520NANA11+7001255..7002696Serpin family protein
LOC_Os11g12530Os.49784.1.S1_at11/1111+7006898..7014167Leucine Rich Repeat family protein, expressed
LOC_Os11g12530OsAffx.25030.1.S1_x_at1/1111+7006898..7014167Leucine Rich Repeat family protein, expressed
LOC_Os11g12530Os.53778.1.A1_s_at1/1111+7006898..7014167Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0016020cellular_componentmembrane
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.29755.5.S1_x_at--234--4772Chr06:21773044..21773068 (25 bp)
GCTGCATTGAGCAACAGGGCAACAA
LOC_Os06g36960
OsAffx.29755.5.S1_x_at--96--2513Chr07:7460838..7460862 (25 bp)
AACATGTCATGCAGCGATGCTCTCC
LOC_Os07g13010
OsAffx.29755.5.S1_x_at--142--6355Chr07:7460853..7460877 (25 bp)
GATGCTCTCCAGCAATACCATAGCA
LOC_Os07g13010
OsAffx.29755.5.S1_x_at--646--6313Chr06:21773247..21773271 (25 bp)
GATGACATTTCCACAGCTTGCAAGT
LOC_Os06g36960
OsAffx.29755.5.S1_x_at--275--9033Chr12:13927895..13928145 (25 bp)
TGCACAACTAGCTGCCAAGAGCATA
LOC_Os12g24410
OsAffx.29755.5.S1_x_at--274--2312Chr06:21774337..21774361 (25 bp)
AAAGCAACACAACCTACCAGTACTC
LOC_Os06g36960
OsAffx.29755.5.S1_x_at--317--6872Chr06:21774392..21774416 (25 bp)
GTATTTTCGTGGAACCTATCTGTAC
LOC_Os06g36960
OsAffx.29755.5.S1_x_at--808--5434Chr07:7462782..7462806 (25 bp)
GAACCTATCTGTACTATACCAGCCA
LOC_Os07g13010
OsAffx.29755.5.S1_x_at--826--8014Chr07:7462913..7462935 (23 bp)
GGAGGTGCAGCCCACCAAGGATCTT
LOC_Os07g13010
OsAffx.29755.5.S1_x_at--818--5796Chr09:4406482..4406640 (25 bp)
GACGAAGTTCATTCTTGTGATTTAT
NONE
OsAffx.29755.5.S1_x_at--690--355Chr09:4406526..4406550 (25 bp)
ATAAGAGCCAAGATCCTACACAAGA
LOC_Os09g08440
Target Sequence 
GCTGCATTGAGCAACAGGGCAACAATAGCAACATGTCATGCAGCGATGCTCTCCAGCAATACCATAGCAAATCATTTAAC
CCAAGGCTCATTGATGACATTTCCACAGCTTGCAAGTGGTTCACAAGAGAACATTCTGACACAACATATGAAAAAAATGC
ACAACTAGCTGCCAAGAGCATAAAACAAAGTCTAACATCAACAACACCAGCACTAGCAAAGGAGCACCCCCTACAGCCCT
TGAAAGCAACACAACCTACCAGTACTCAACCAGACAAGGAAGAATCAAACAAGGATGGTATTTTCGTGGAACCTATCTGT
ACTATACCAGCCAAAAAGGAGGAGGTGCAGCCCACCAAGGATCTTGAAAGCAACTCTACAGAGTTTGTTATCGATATAGA
GGGTCGATATGATGTTGAAGACATAACAGGTCACACAATGGATAAGACGAAGTTCATTCTTGTGATTTATTCAAACTCTT
CAGAAGATCATAAGAGCCAAGATCCTACACAAGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.29755.5.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis